Literature DB >> 19801482

BchY-based degenerate primers target all types of anoxygenic photosynthetic bacteria in a single PCR.

Natalya Yutin1, Marcelino T Suzuki, Mira Rosenberg, Denisse Rotem, Michael T Madigan, Jörg Süling, Johannes F Imhoff, Oded Béjà.   

Abstract

To detect anoxygenic bacteria containing either type 1 or type 2 photosynthetic reaction centers in a single PCR, we designed a degenerate primer set based on the bchY gene. The new primers were validated in silico using the GenBank nucleotide database as well as by PCR on pure strains and environmental DNA.

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Year:  2009        PMID： 19801482      PMCID： PMC2786397          DOI： 10.1128/AEM.01014-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  17 in total

1.  Unsuspected diversity among marine aerobic anoxygenic phototrophs.

Authors:  Oded Béjà; Marcelino T Suzuki; John F Heidelberg; William C Nelson; Christina M Preston; Tohru Hamada; Jonathan A Eisen; Claire M Fraser; Edward F DeLong
Journal:  Nature       Date:  2002-02-07       Impact factor: 49.962

2.  Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments.

Authors:  L A Achenbach; J Carey; M T Madigan
Journal:  Appl Environ Microbiol       Date:  2001-07       Impact factor: 4.792

3.  Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic lake.

Authors:  Elizabeth A Karr; W Matthew Sattley; Deborah O Jung; Michael T Madigan; Laurie A Achenbach
Journal:  Appl Environ Microbiol       Date:  2003-08       Impact factor: 4.792

Review 4.  Complex evolution of photosynthesis.

Authors:  Jin Xiong; Carl E Bauer
Journal:  Annu Rev Plant Biol       Date:  2002       Impact factor: 26.379

5.  Prevalence of the Chloroflexi-related SAR202 bacterioplankton cluster throughout the mesopelagic zone and deep ocean.

Authors:  R M Morris; M S Rappé; E Urbach; S A Connon; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

6.  Novel primers reveal wider diversity among marine aerobic anoxygenic phototrophs.

Authors:  Natalya Yutin; Marcelino T Suzuki; Oded Béjà
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

7.  Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria.

Authors:  Shi Yan; Bernhard M Fuchs; Sabine Lenk; Jens Harder; Jörg Wulf; Nian-Zhi Jiao; Rudolf Amann
Journal:  Syst Appl Microbiol       Date:  2009-04       Impact factor: 4.022

8.  Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates.

Authors:  Hanno Biebl; Martin Allgaier; Brian J Tindall; Michal Koblizek; Heinrich Lünsdorf; Rüdiger Pukall; Irene Wagner-Döbler
Journal:  Int J Syst Evol Microbiol       Date:  2005-05       Impact factor: 2.747

9.  Isolation of a photoactive photosynthetic reaction center-core antenna complex from Heliobacillus mobilis.

Authors:  J T Trost; R E Blankenship
Journal:  Biochemistry       Date:  1989-12-26       Impact factor: 3.162

10.  Phylogeny of green sulfur bacteria on the basis of gene sequences of 16S rRNA and of the Fenna-Matthews-Olson protein.

Authors:  Boris Alexander; Jesper H Andersen; Raymond P Cox; Johannes F Imhoff
Journal:  Arch Microbiol       Date:  2002-05-22       Impact factor: 2.552
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  9 in total

1.  Abundance and genetic diversity of aerobic anoxygenic phototrophic bacteria of coastal regions of the pacific ocean.

Authors:  Anna E Ritchie; Zackary I Johnson
Journal:  Appl Environ Microbiol       Date:  2012-02-03       Impact factor: 4.792

2.  Isolation of optically targeted single bacteria by application of fluidic force microscopy to aerobic anoxygenic phototrophs from the phyllosphere.

Authors:  Philipp Stiefel; Tomaso Zambelli; Julia A Vorholt
Journal:  Appl Environ Microbiol       Date:  2013-06-14       Impact factor: 4.792

3.  Novel acsF Gene Primers Revealed a Diverse Phototrophic Bacterial Population, Including Gemmatimonadetes, in Lake Taihu (China).

Authors:  Yili Huang; Yanhua Zeng; Hang Lu; Hao Feng; Yonghui Zeng; Michal Koblížek
Journal:  Appl Environ Microbiol       Date:  2016-08-30       Impact factor: 4.792

4.  Aerobic Anoxygenic Photosynthesis Is Commonly Present within the Genus Limnohabitans.

Authors:  Vojtěch Kasalický; Yonghui Zeng; Kasia Piwosz; Karel Šimek; Hana Kratochvilová; Michal Koblížek
Journal:  Appl Environ Microbiol       Date:  2017-12-15       Impact factor: 4.792

5.  Horizontal transfers of two types of puf operons among phototrophic members of the Roseobacter clade.

Authors:  Michal Koblížek; Vladimíra Moulisová; Markéta Muroňová; Miroslav Oborník
Journal:  Folia Microbiol (Praha)       Date:  2014-08-06       Impact factor: 2.099

6.  Anoxygenic Phototrophs Span Geochemical Gradients and Diverse Morphologies in Terrestrial Geothermal Springs.

Authors:  Trinity L Hamilton; Annastacia C Bennett; Senthil K Murugapiran; Jeff R Havig
Journal:  mSystems       Date:  2019-11-05       Impact factor: 6.496

Review 7.  New Dimensions in Microbial Ecology-Functional Genes in Studies to Unravel the Biodiversity and Role of Functional Microbial Groups in the Environment.

Authors:  Johannes F Imhoff
Journal:  Microorganisms       Date:  2016-05-24

8.  Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp.

Authors:  Athanasios Zervas; Yonghui Zeng; Anne Mette Madsen; Lars H Hansen
Journal:  Genome Biol Evol       Date:  2019-10-01       Impact factor: 3.416

Review 9.  Phylum Gemmatimonadota and Its Role in the Environment.

Authors:  Izabela Mujakić; Kasia Piwosz; Michal Koblížek
Journal:  Microorganisms       Date:  2022-01-12
  9 in total

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