Literature DB >> 21807729

The shape of mammalian phylogeny: patterns, processes and scales.

Andy Purvis1, Susanne A Fritz, Jesús Rodríguez, Paul H Harvey, Richard Grenyer.   

Abstract

Mammalian phylogeny is far too asymmetric for all contemporaneous lineages to have had equal chances of diversifying. We consider this asymmetry or imbalance from four perspectives. First, we infer a minimal set of 'regime changes'-points at which net diversification rate has changed-identifying 15 significant radiations and 12 clades that may be 'downshifts'. We next show that mammalian phylogeny is similar in shape to a large set of published phylogenies of other vertebrate, arthropod and plant groups, suggesting that many clades may diversify under a largely shared set of 'rules'. Third, we simulate six simple macroevolutionary models, showing that those where speciation slows down as geographical or niche space is filled, produce more realistic phylogenies than do models involving key innovations. Lastly, an analysis of the spatial scaling of imbalance shows that the phylogeny of species within an assemblage, ecoregion or larger area always tends to be more unbalanced than expected from the phylogeny of species at the next more inclusive spatial scale. We conclude with a verbal model of mammalian macroevolution, which emphasizes the importance to diversification of accessing new regions of geographical or niche space.

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Year:  2011        PMID: 21807729      PMCID: PMC3138615          DOI: 10.1098/rstb.2011.0025

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  50 in total

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Review 2.  Getting the measure of biodiversity.

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3.  Evaluating phylogenetic tree shape: two modifications to Fusco & Cronk's method.

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4.  Contingent predictability in evolution: key traits and diversification.

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5.  Whole-tree methods for detecting differential diversification rates.

Authors:  Kai M A Chan; Brian R Moore
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6.  Phylogeny imbalance: taxonomic level matters.

Authors:  Andy Purvis; Paul-Michael Agapow
Journal:  Syst Biol       Date:  2002-12       Impact factor: 15.683

7.  Signatures of random and selective mass extinctions in phylogenetic tree balance.

Authors:  Stephen B Heard; Arne Ø Mooers
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8.  Power of eight tree shape statistics to detect nonrandom diversification: a comparison by simulation of two models of cladogenesis.

Authors:  Paul-Michael Agapow; Andy Purvis
Journal:  Syst Biol       Date:  2002-12       Impact factor: 15.683

9.  Does imbalance in phylogenies reflect only bias?

Authors:  Ed Stam
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10.  Phylogenetic structure of mammal assemblages at large geographical scales: linking phylogenetic community ecology with macroecology.

Authors:  Marcel Cardillo
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

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  25 in total

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Journal:  Proc Biol Sci       Date:  2013-07-03       Impact factor: 5.349

2.  Detecting shifts in diversity limits from molecular phylogenies: what can we know?

Authors:  Lynsey McInnes; C David L Orme; A Purvis
Journal:  Proc Biol Sci       Date:  2011-03-23       Impact factor: 5.349

3.  Ecology and evolution of mammalian biodiversity.

Authors:  Kate E Jones; Kamran Safi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

4.  How diversification rates and diversity limits combine to create large-scale species-area relationships.

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

5.  Phylogenetic structure of mammal assemblages at large geographical scales: linking phylogenetic community ecology with macroecology.

Authors:  Marcel Cardillo
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

6.  How the past impacts the future: modelling the performance of evolutionarily distinct mammals through time.

Authors:  D J Bennett; M D Sutton; S T Turvey
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-11-04       Impact factor: 6.237

7.  More on the Best Evolutionary Rate for Phylogenetic Analysis.

Authors:  Seraina Klopfstein; Tim Massingham; Nick Goldman
Journal:  Syst Biol       Date:  2017-09-01       Impact factor: 15.683

8.  A Metric on Phylogenetic Tree Shapes.

Authors:  C Colijn; G Plazzotta
Journal:  Syst Biol       Date:  2018-01-01       Impact factor: 15.683

Review 9.  The genome as a life-history character: why rate of molecular evolution varies between mammal species.

Authors:  Lindell Bromham
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

10.  Can unified theories of biodiversity explain mammalian macroecological patterns?

Authors:  Kate E Jones; Tim M Blackburn; Nick J B Isaac
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

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