Literature DB >> 16313176

Early events in apomyoglobin unfolding probed by laser T-jump/UV resonance Raman spectroscopy.

Cheng-Yen Huang1, Gurusamy Balakrishnan, Thomas G Spiro.   

Abstract

Early events in the unfolding of apomyoglobin are studied with time-resolved ultraviolet resonance Raman (UVRR) spectroscopy coupled to a laser-induced temperature jump (T-jump). The UVRR spectra provide simultaneous probes of the aromatic side-chain environment and the amide backbone conformation. The amide bands reveal helix melting, with relaxation times of 70 and 16 micros at pH 5.5 and 4, respectively, in reasonable agreement with previously reported amide I' FTIR/T-jump relaxations (132 and 14 micros at pD 5.5 and 3). The acceleration at pH 4 is consistent with destabilization of the hydrophobic AGH core of the protein via protonation of a pair of buried histidines. The same relaxation times are found for intensity loss by the phenylalanine F12 band, signaling solvent exposure of the phenyl rings. There are seven Phe residues, distributed throughout the protein; they produce a global response, parallel to helix melting. Relaxation of the tryptophan W16 intensity also parallels helix melting at pH 5.5 but is twice as fast, 7 micros, at pH 4. The pH 5.5 signal arises from Trp 7, which is partially solvent-exposed, while the pH 4 signal arises from the buried Trp 14. Thus, Trp 14 is exposed to the solvent prior to helix melting of the AGH core, suggesting initial displacement of the A helix, upon which Trp 14 resides. All of the UVRR signals show a prompt response, within the instrument resolution (approximately 60 ns), which accounts for half of the total relaxation amplitude. This response is attributed to solvent penetration into the protein, possibly convoluted with melting of hydrated helix segments.

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Year:  2005        PMID: 16313176     DOI: 10.1021/bi051578u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

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2.  Investigation of an unnatural amino acid for use as a resonance Raman probe: Detection limits, solvent and temperature dependence of the νC≡N band of 4-cyanophenylalanine.

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Journal:  J Raman Spectrosc       Date:  2008-11       Impact factor: 3.133

3.  A conformational switch to beta-sheet structure in cytochrome c leads to heme exposure. Implications for cardiolipin peroxidation and apoptosis.

Authors:  Gurusamy Balakrishnan; Ying Hu; Oyeyemi F Oyerinde; Jia Su; John T Groves; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

4.  Adventures in bioinorganic chemistry.

Authors:  Thomas G Spiro
Journal:  Inorg Chem       Date:  2007-11-14       Impact factor: 5.165

5.  Enthalpic and entropic stages in alpha-helical peptide unfolding, from laser T-jump/UV Raman spectroscopy.

Authors:  Gurusamy Balakrishnan; Ying Hu; Gretchen M Bender; Zelleka Getahun; William F DeGrado; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2007-10-02       Impact factor: 15.419

6.  Exposing the Nucleation Site in α-Helix Folding: A Joint Experimental and Simulation Study.

Authors:  Arusha Acharyya; Yunhui Ge; Haifan Wu; William F DeGrado; Vincent A Voelz; Feng Gai
Journal:  J Phys Chem B       Date:  2019-02-14       Impact factor: 2.991

7.  Elucidating Peptide and Protein Structure and Dynamics: UV Resonance Raman Spectroscopy.

Authors:  Sulayman A Oladepo; Kan Xiong; Zhenmin Hong; Sanford A Asher
Journal:  J Phys Chem Lett       Date:  2011-02-17       Impact factor: 6.475

8.  Tryptophan-lipid interactions in membrane protein folding probed by ultraviolet resonance Raman and fluorescence spectroscopy.

Authors:  Katheryn M Sanchez; Guipeun Kang; Beijing Wu; Judy E Kim
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

9.  His26 protonation in cytochrome c triggers microsecond β-sheet formation and heme exposure: implications for apoptosis.

Authors:  Gurusamy Balakrishnan; Ying Hu; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-11-06       Impact factor: 15.419

10.  Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy.

Authors:  Ignacio López-Peña; Brian S Leigh; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2015-07-29       Impact factor: 3.162

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