Literature DB >> 16311335

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii.

Florian Raible1, Kristin Tessmar-Raible, Kazutoyo Osoegawa, Patrick Wincker, Claire Jubin, Guillaume Balavoine, David Ferrier, Vladimir Benes, Pieter de Jong, Jean Weissenbach, Peer Bork, Detlev Arendt.   

Abstract

Previous genome comparisons have suggested that one important trend in vertebrate evolution has been a sharp rise in intron abundance. By using genomic data and expressed sequence tags from the marine annelid Platynereis dumerilii, we provide direct evidence that about two-thirds of human introns predate the bilaterian radiation but were lost from insect and nematode genomes to a large extent. A comparison of coding exon sequences confirms the ancestral nature of Platynereis and human genes. Thus, the urbilaterian ancestor had complex, intron-rich genes that have been retained in Platynereis and human.

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Year:  2005        PMID: 16311335     DOI: 10.1126/science.1119089

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  94 in total

Review 1.  Intron creation and DNA repair.

Authors:  Hermann Ragg
Journal:  Cell Mol Life Sci       Date:  2010-09-19       Impact factor: 9.261

2.  Neuronal transcriptome of Aplysia: neuronal compartments and circuitry.

Authors:  Leonid L Moroz; John R Edwards; Sathyanarayanan V Puthanveettil; Andrea B Kohn; Thomas Ha; Andreas Heyland; Bjarne Knudsen; Anuj Sahni; Fahong Yu; Li Liu; Sami Jezzini; Peter Lovell; William Iannucculli; Minchen Chen; Tuan Nguyen; Huitao Sheng; Regina Shaw; Sergey Kalachikov; Yuri V Panchin; William Farmerie; James J Russo; Jingyue Ju; Eric R Kandel
Journal:  Cell       Date:  2006-12-29       Impact factor: 41.582

3.  Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes.

Authors:  Schraga H Schwartz; João Silva; David Burstein; Tal Pupko; Eduardo Eyras; Gil Ast
Journal:  Genome Res       Date:  2007-11-21       Impact factor: 9.043

4.  Three distinct modes of intron dynamics in the evolution of eukaryotes.

Authors:  Liran Carmel; Yuri I Wolf; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Res       Date:  2007-05-10       Impact factor: 9.043

Review 5.  The evolution of nervous system centralization.

Authors:  Detlev Arendt; Alexandru S Denes; Gáspár Jékely; Kristin Tessmar-Raible
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-04-27       Impact factor: 6.237

6.  Conserved intron positions in FGFR genes reflect the modular structure of FGFR and reveal stepwise addition of domains to an already complex ancestral FGFR.

Authors:  Nicole Rebscher; Christina Deichmann; Stefanie Sudhop; Jens Holger Fritzenwanker; Stephen Green; Monika Hassel
Journal:  Dev Genes Evol       Date:  2009-12-17       Impact factor: 0.900

7.  Alternative splicing: a missing piece in the puzzle of intron gain.

Authors:  Rosa Tarrío; Francisco J Ayala; Francisco Rodríguez-Trelles
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-07       Impact factor: 11.205

8.  Phylogenomic analyses unravel annelid evolution.

Authors:  Torsten H Struck; Christiane Paul; Natascha Hill; Stefanie Hartmann; Christoph Hösel; Michael Kube; Bernhard Lieb; Achim Meyer; Ralph Tiedemann; Günter Purschke; Christoph Bleidorn
Journal:  Nature       Date:  2011-03-03       Impact factor: 49.962

9.  Intron presence-absence polymorphisms in Daphnia.

Authors:  Angela R Omilian; Douglas G Scofield; Michael Lynch
Journal:  Mol Biol Evol       Date:  2008-07-29       Impact factor: 16.240

10.  An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals.

Authors:  Tokiharu Takahashi; Carmel McDougall; Jolyon Troscianko; Wei-Chung Chen; Ahamarshan Jayaraman-Nagarajan; Sebastian M Shimeld; David E K Ferrier
Journal:  BMC Evol Biol       Date:  2009-09-25       Impact factor: 3.260

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