Literature DB >> 17190607

Neuronal transcriptome of Aplysia: neuronal compartments and circuitry.

Leonid L Moroz1, John R Edwards, Sathyanarayanan V Puthanveettil, Andrea B Kohn, Thomas Ha, Andreas Heyland, Bjarne Knudsen, Anuj Sahni, Fahong Yu, Li Liu, Sami Jezzini, Peter Lovell, William Iannucculli, Minchen Chen, Tuan Nguyen, Huitao Sheng, Regina Shaw, Sergey Kalachikov, Yuri V Panchin, William Farmerie, James J Russo, Jingyue Ju, Eric R Kandel.   

Abstract

Molecular analyses of Aplysia, a well-established model organism for cellular and systems neural science, have been seriously handicapped by a lack of adequate genomic information. By sequencing cDNA libraries from the central nervous system (CNS), we have identified over 175,000 expressed sequence tags (ESTs), of which 19,814 are unique neuronal gene products and represent 50%-70% of the total Aplysia neuronal transcriptome. We have characterized the transcriptome at three levels: (1) the central nervous system, (2) the elementary components of a simple behavior: the gill-withdrawal reflex-by analyzing sensory, motor, and serotonergic modulatory neurons, and (3) processes of individual neurons. In addition to increasing the amount of available gene sequences of Aplysia by two orders of magnitude, this collection represents the largest database available for any member of the Lophotrochozoa and therefore provides additional insights into evolutionary strategies used by this highly successful diversified lineage, one of the three proposed superclades of bilateral animals.

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Year:  2006        PMID: 17190607      PMCID: PMC4024467          DOI: 10.1016/j.cell.2006.09.052

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  60 in total

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Journal:  Mol Phylogenet Evol       Date:  2004-11       Impact factor: 4.286

2.  The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa.

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Journal:  Mol Biol Evol       Date:  2005-02-09       Impact factor: 16.240

Review 3.  Cnidarians and ancestral genetic complexity in the animal kingdom.

Authors:  David J Miller; Eldon E Ball; Ulrich Technau
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4.  Feeding behavior in Aplysia: a simple system for the study of motivation.

Authors:  I Kupfermann
Journal:  Behav Biol       Date:  1974-01

5.  Estimating the pattern of nucleotide substitution.

Authors:  Z Yang
Journal:  J Mol Evol       Date:  1994-07       Impact factor: 2.395

6.  Activity of an identified serotonergic neuron in free moving Aplysia correlates with behavioral arousal.

Authors:  I Kupfermann; K R Weiss
Journal:  Brain Res       Date:  1982-06-10       Impact factor: 3.252

7.  Anomalous rectification in the metacerebral giant cells and its consequences for synaptic transmission.

Authors:  E R Kandel; L Tauc
Journal:  J Physiol       Date:  1966-03       Impact factor: 5.182

8.  Complete DNA sequence of the mitochondrial genome of the sea-slug, Aplysia californica: conservation of the gene order in Euthyneura.

Authors:  Bjarne Knudsen; Andrea B Kohn; Ben Nahir; Catherine S McFadden; Leonid L Moroz
Journal:  Mol Phylogenet Evol       Date:  2005-10-17       Impact factor: 4.286

9.  Two-color in situ hybridization in the CNS of Aplysia californica.

Authors:  Sami H Jezzini; Michaela Bodnarova; Leonid L Moroz
Journal:  J Neurosci Methods       Date:  2005-08-02       Impact factor: 2.390

10.  Simple cDNA normalization using kamchatka crab duplex-specific nuclease.

Authors:  Pavel A Zhulidov; Ekaterina A Bogdanova; Alex S Shcheglov; Laura L Vagner; George L Khaspekov; Valery B Kozhemyako; Mikhail V Matz; Ella Meleshkevitch; Leonid L Moroz; Sergey A Lukyanov; Dmitry A Shagin
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

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  146 in total

1.  Co-induction of LTP and LTD and its regulation by protein kinases and phosphatases.

Authors:  Kathryn B Grey; Brian D Burrell
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2.  Changes in D-aspartate ion currents in the Aplysia nervous system with aging.

Authors:  Lynne A Fieber; Stephen L Carlson; Thomas R Capo; Michael C Schmale
Journal:  Brain Res       Date:  2010-05-07       Impact factor: 3.252

3.  Differential evolutionary rates of neuronal transcriptome in Aplysia kurodai and Aplysia californica as a tool for gene mining.

Authors:  Sun-Lim Choi; Yong-Seok Lee; Young-Soo Rim; Tae-Hyung Kim; Leonid L Moroz; Eric R Kandel; Jong Bhak; Bong-Kiun Kaang
Journal:  J Neurogenet       Date:  2010-07       Impact factor: 1.250

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Journal:  Purinergic Signal       Date:  2012-05-01       Impact factor: 3.765

5.  The transcriptome of the early life history stages of the California Sea Hare Aplysia californica.

Authors:  T J Fiedler; A Hudder; S J McKay; S Shivkumar; T R Capo; M C Schmale; P J Walsh
Journal:  Comp Biochem Physiol Part D Genomics Proteomics       Date:  2010-04-02       Impact factor: 2.674

6.  Sensory sea slugs: Towards decoding the molecular toolkit required for a mollusc to smell.

Authors:  Scott F Cummins; Bernard M Degnan
Journal:  Commun Integr Biol       Date:  2010-09

Review 7.  Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures.

Authors:  Elizabeth K Neumann; Thanh D Do; Troy J Comi; Jonathan V Sweedler
Journal:  Angew Chem Int Ed Engl       Date:  2019-04-11       Impact factor: 15.336

Review 8.  GABA as a Neurotransmitter in Gastropod Molluscs.

Authors:  Mark W Miller
Journal:  Biol Bull       Date:  2019-01-16       Impact factor: 1.818

9.  Newly Identified Aplysia SPTR-Gene Family-Derived Peptides: Localization and Function.

Authors:  Guo Zhang; Wang-Ding Yuan; Ferdinand S Vilim; Elena V Romanova; Ke Yu; Si-Yuan Yin; Zi-Wei Le; Ying-Yu Xue; Ting-Ting Chen; Guo-Kai Chen; Song-An Chen; Elizabeth C Cropper; Jonathan V Sweedler; Klaudiusz R Weiss; Jian Jing
Journal:  ACS Chem Neurosci       Date:  2018-03-27       Impact factor: 4.418

10.  Temporal phases of activity-dependent plasticity and memory are mediated by compartmentalized routing of MAPK signaling in aplysia sensory neurons.

Authors:  Justin L Shobe; Yali Zhao; Shara Stough; Xiaojing Ye; Vickie Hsuan; Kelsey C Martin; Thomas J Carew
Journal:  Neuron       Date:  2009-01-15       Impact factor: 17.173

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