Literature DB >> 16309780

On a chromosome far, far away: LCRs and gene expression.

Ann Dean1.   

Abstract

Transcription activation of a gene involves the ordered recruitment of components of the basal transcription machinery in concert with alterations in chromatin structure, including nucleosome remodeling and post-translational modification of histones. Enhancers and locus control regions (LCRs) that are remote from the genes they activate, recruit the complexes that carry out these alterations and, sometimes, recruit RNA polymerase II. The question of how these distant activators interact with their target genes has been of long-standing interest. Recent data indicate that LCRs mediate contact with their coordinate genes through the formation of domains of histone modification and of intra- and inter-chromosomal loops and that they might localize genes within nuclear regions that favor transcription.

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Year:  2005        PMID: 16309780     DOI: 10.1016/j.tig.2005.11.001

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  81 in total

1.  DNase I hypersensitive site II of the human growth hormone locus control region mediates an essential and distinct long-range enhancer function.

Authors:  Margaret R Fleetwood; Yugong Ho; Nancy E Cooke; Stephen A Liebhaber
Journal:  J Biol Chem       Date:  2012-06-05       Impact factor: 5.157

Review 2.  Enhancer and promoter interactions-long distance calls.

Authors:  Ivan Krivega; Ann Dean
Journal:  Curr Opin Genet Dev       Date:  2011-12-12       Impact factor: 5.578

Review 3.  Gene positioning.

Authors:  Carmelo Ferrai; Inês Jesus de Castro; Liron Lavitas; Mita Chotalia; Ana Pombo
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-19       Impact factor: 10.005

4.  Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation.

Authors:  Sang-Hyun Song; AeRi Kim; Tobias Ragoczy; M A Bender; Mark Groudine; Ann Dean
Journal:  Blood       Date:  2010-06-22       Impact factor: 22.113

5.  eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci.

Authors:  Kambiz Mousavi; Hossein Zare; Stefania Dell'orso; Lars Grontved; Gustavo Gutierrez-Cruz; Assia Derfoul; Gordon L Hager; Vittorio Sartorelli
Journal:  Mol Cell       Date:  2013-08-29       Impact factor: 17.970

6.  Silk gland factor-2, involved in fibroin gene transcription, consists of LIM homeodomain, LIM-interacting, and single-stranded DNA-binding proteins.

Authors:  Kaoru Ohno; Jun-ichi Sawada; Shigeharu Takiya; Mai Kimoto; Akiko Matsumoto; Takuya Tsubota; Keiro Uchino; Chi-chung Hui; Hideki Sezutsu; Hiroshi Handa; Yoshiaki Suzuki
Journal:  J Biol Chem       Date:  2013-09-10       Impact factor: 5.157

7.  Expression of GATA-1 in a non-hematopoietic cell line induces beta-globin locus control region chromatin structure remodeling and an erythroid pattern of gene expression.

Authors:  Michael E Layon; Catherine J Ackley; Rachel J West; Christopher H Lowrey
Journal:  J Mol Biol       Date:  2006-12-06       Impact factor: 5.469

8.  Distinctive signatures of histone methylation in transcribed coding and noncoding human beta-globin sequences.

Authors:  AeRi Kim; Christine M Kiefer; Ann Dean
Journal:  Mol Cell Biol       Date:  2006-12-11       Impact factor: 4.272

9.  The callipyge mutation enhances bidirectional long-range DLK1-GTL2 intergenic transcription in cis.

Authors:  Haruko Takeda; Florian Caiment; Maria Smit; Samuel Hiard; Xavier Tordoir; Noelle Cockett; Michel Georges; Carole Charlier
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-11       Impact factor: 11.205

10.  Distinct chromatin configurations regulate the initiation and the maintenance of hGH gene expression.

Authors:  Yugong Ho; Brian M Shewchuk; Stephen A Liebhaber; Nancy E Cooke
Journal:  Mol Cell Biol       Date:  2013-02-19       Impact factor: 4.272

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