Literature DB >> 16307226

Assessment of ancestry probabilities in the presence of genotyping errors.

Hongmei Zhang1, Hal Stern.   

Abstract

This paper extends an approach for estimating the ancestry probability, the probability that an inbred line is an ancestor of a given hybrid, to account for genotyping errors. The effect of such errors on ancestry probability estimates is evaluated through simulation. The simulation study shows that if misclassification is ignored, then ancestry probabilities may be slightly overestimated. The sensitivity of ancestry probability calculations to the assumed genotyping error rate is also assessed.

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Year:  2005        PMID： 16307226     DOI： 10.1007/s00122-005-0148-3

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  10 in total

1.  Methods for multipoint disease mapping using linkage disequilibrium.

Authors:  B Rannala; M Slatkin
Journal:  Genet Epidemiol       Date:  2000       Impact factor: 2.135

2.  Identification and analysis of error types in high-throughput genotyping.

Authors:  K R Ewen; M Bahlo; S A Treloar; D F Levinson; B Mowry; J W Barlow; S J Foote
Journal:  Am J Hum Genet       Date:  2000-08-02       Impact factor: 11.025

3.  Likelihood-based disequilibrium mapping for two-marker haplotype data.

Authors:  Chad Garner; Montgomery Slatkin
Journal:  Theor Popul Biol       Date:  2002-03       Impact factor: 1.570

4.  Assessing probability of ancestry using simple sequence repeat profiles: applications to maize hybrids and inbreds.

Authors:  Donald A Berry; Jon D Seltzer; Chongqing Xie; Deanne L Wright; J Stephen C Smith
Journal:  Genetics       Date:  2002-06       Impact factor: 4.562

5.  Estimation of pairwise relationships in the presence of genotyping errors.

Authors:  K W Broman; J L Weber
Journal:  Am J Hum Genet       Date:  1998-11       Impact factor: 11.025

6.  Disequilibrium mapping: composite likelihood for pairwise disequilibrium.

Authors:  B Devlin; N Risch; K Roeder
Journal:  Genomics       Date:  1996-08-15       Impact factor: 5.736

7.  Accurate inference of relationships in sib-pair linkage studies.

Authors:  M Boehnke; N J Cox
Journal:  Am J Hum Genet       Date:  1997-08       Impact factor: 11.025

8.  Parentage analysis with genetic markers in natural populations. I. The expected proportion of offspring with unambiguous paternity.

Authors:  R Chakraborty; T R Meagher; P E Smouse
Journal:  Genetics       Date:  1988-03       Impact factor: 4.562

9.  Parentage and kinship studies in an obligate brood parasitic bird, the brown-headed cowbird (Molothrus ater), using microsatellite DNA markers.

Authors:  G W Alderson; H L Gibbs; S G Sealy
Journal:  J Hered       Date:  1999 Jan-Feb       Impact factor: 2.645

10.  Statistical confidence for likelihood-based paternity inference in natural populations.

Authors:  T C Marshall; J Slate; L E Kruuk; J M Pemberton
Journal:  Mol Ecol       Date:  1998-05       Impact factor: 6.185
  10 in total
  1 in total

1.  Genotyping errors in a calibrated DNA register: implications for identification of individuals.

Authors:  Øystein A Haaland; Kevin A Glover; Bjørghild B Seliussen; Hans J Skaug
Journal:  BMC Genet       Date:  2011-04-20       Impact factor: 2.797
  1 in total

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