Literature DB >> 16293252

What factor drives the fibrillogenic association of beta-sheets?

Ariel Fernández1.   

Abstract

The identification of the driving factor for fibril formation is paramount to understand the molecular basis of amyloidogenic disease. Recently, an atomic-detail structure of a fibrillogenic aggregate was reported and revealed a tight packing of beta-sheets. However, there is not a single pair-wise interaction of significance between the beta-sheets, no hydrogen bond and no hydrophobic interaction. Instead, there is extensive burial of polar groups at the interface. These observations lead to the question: What factor drives the association of beta-sheets? This issue is addressed by combining all-atom molecular dynamics with an implicit-solvent analysis. The driving force for the association arises from the mechanical equivalent of the dehydration propensity of pre-formed intra-sheet hydrogen bonds and dipole-dipole interactions.

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Year:  2005        PMID: 16293252     DOI: 10.1016/j.febslet.2005.10.058

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  9 in total

1.  Molecular dynamics analyses of cross-beta-spine steric zipper models: beta-sheet twisting and aggregation.

Authors:  Luciana Esposito; Carlo Pedone; Luigi Vitagliano
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

Review 2.  Protein aggregation and bioprocessing.

Authors:  Mary E M Cromwell; Eric Hilario; Fred Jacobson
Journal:  AAPS J       Date:  2006-09-15       Impact factor: 4.009

3.  Molecular dynamics simulations on the oligomer-formation process of the GNNQQNY peptide from yeast prion protein Sup35.

Authors:  Zhuqing Zhang; Hao Chen; Hongjun Bai; Luhua Lai
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

4.  Insights into stability and toxicity of amyloid-like oligomers by replica exchange molecular dynamics analyses.

Authors:  Alfonso De Simone; Luciana Esposito; Carlo Pedone; Luigi Vitagliano
Journal:  Biophys J       Date:  2008-05-09       Impact factor: 4.033

5.  Hydration profiles of amyloidogenic molecular structures.

Authors:  Florin Despa; Ariel Fernández; L Ridgway Scott; R Stephen Berry
Journal:  J Biol Phys       Date:  2008-11-05       Impact factor: 1.365

6.  Establishing a link between amino acid sequences and self-associating and viscoelastic behavior of two closely related monoclonal antibodies.

Authors:  Sandeep Yadav; Alavattam Sreedhara; Sonoko Kanai; Jun Liu; Samantha Lien; Henry Lowman; Devendra S Kalonia; Steven J Shire
Journal:  Pharm Res       Date:  2011-04-06       Impact factor: 4.200

7.  Stability and structure of oligomers of the Alzheimer peptide Abeta16-22: from the dimer to the 32-mer.

Authors:  Ute F Röhrig; Alessandro Laio; Nazario Tantalo; Michele Parrinello; Roberto Petronzio
Journal:  Biophys J       Date:  2006-08-18       Impact factor: 4.033

8.  Structural characterization of GNNQQNY amyloid fibrils by magic angle spinning NMR.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

9.  Insights into structure, stability, and toxicity of monomeric and aggregated polyglutamine models from molecular dynamics simulations.

Authors:  Luciana Esposito; Antonella Paladino; Carlo Pedone; Luigi Vitagliano
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

  9 in total

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