Literature DB >> 16292523

Approaches to semi-synthetic minimal cells: a review.

Pier Luigi Luisi1, Francesca Ferri, Pasquale Stano.   

Abstract

Following is a synthetic review on the minimal living cell, defined as an artificial or a semi-artificial cell having the minimal and sufficient number of components to be considered alive. We describe concepts and experiments based on these constructions, and we point out that an operational definition of minimal cell does not define a single species, but rather a broad family of interrelated cell-like structures. The relevance of these researches, considering that the minimal cell should also correspond to the early simple cell in the origin of life and early evolution, is also explained. In addition, we present detailed data in relation to minimal genome, with observations cited by several authors who agree on setting the theoretical full-fledged minimal genome to a figure between 200 and 300 genes. However, further theoretical assumptions may significantly reduce this number (i.e. by eliminating ribosomal proteins and by limiting DNA and RNA polymerases to only a few, less specific molecular species). Generally, the experimental approach to minimal cells consists in utilizing liposomes as cell models and in filling them with genes/enzymes corresponding to minimal cellular functions. To date, a few research groups have successfully induced the expression of single proteins, such as the green fluorescence protein, inside liposomes. Here, different approaches are described and compared. Present constructs are still rather far from the minimal cell, and experimental as well as theoretical difficulties opposing further reduction of complexity are discussed. While most of these minimal cell constructions may represent relatively poor imitations of a modern full-fledged cell, further studies will begin precisely from these constructs. In conclusion, we give a brief outline of the next possible steps on the road map to the minimal cell.

Mesh:

Year:  2006        PMID: 16292523     DOI: 10.1007/s00114-005-0056-z

Source DB:  PubMed          Journal:  Naturwissenschaften        ISSN: 0028-1042


  52 in total

Review 1.  Artificial cells: prospects for biotechnology.

Authors:  Andrew Pohorille; David Deamer
Journal:  Trends Biotechnol       Date:  2002-03       Impact factor: 19.536

2.  Self-maintenance and self-reproduction in an abstract cell model.

Authors:  N Ono; T Ikegami
Journal:  J Theor Biol       Date:  2000-09-21       Impact factor: 2.691

3.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

4.  Membrane tube formation from giant vesicles by dynamic association of motor proteins.

Authors:  Gerbrand Koster; Martijn VanDuijn; Bas Hofs; Marileen Dogterom
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

5.  Global transposon mutagenesis and a minimal Mycoplasma genome.

Authors:  C A Hutchison; S N Peterson; S R Gill; R T Cline; O White; C M Fraser; H O Smith; J C Venter
Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

Review 6.  Nucleic-acid-templated synthesis as a model system for ancient translation.

Authors:  Christopher T Calderone; David R Liu
Journal:  Curr Opin Chem Biol       Date:  2004-12       Impact factor: 8.822

7.  Peptidyl-transferase ribozymes: trans reactions, structural characterization and ribosomal RNA-like features.

Authors:  B Zhang; T R Cech
Journal:  Chem Biol       Date:  1998-10

8.  Protein expression in liposomes.

Authors:  T Oberholzer; K H Nierhaus; P L Luisi
Journal:  Biochem Biophys Res Commun       Date:  1999-08-02       Impact factor: 3.575

9.  On the early emergence of reverse transcription: theoretical basis and experimental evidence.

Authors:  A Lazcano; V Valverde; G Hernández; P Gariglio; G E Fox; J Oró
Journal:  J Mol Evol       Date:  1992-12       Impact factor: 2.395

10.  Enzymatic RNA replication in self-reproducing vesicles: an approach to a minimal cell.

Authors:  T Oberholzer; R Wick; P L Luisi; C K Biebricher
Journal:  Biochem Biophys Res Commun       Date:  1995-02-06       Impact factor: 3.575

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  87 in total

1.  Synthetic biology: minimal cell mimicry.

Authors:  Pier Luigi Luisi; Pasquale Stano
Journal:  Nat Chem       Date:  2011-09-23       Impact factor: 24.427

2.  Self-reproduction of supramolecular giant vesicles combined with the amplification of encapsulated DNA.

Authors:  Kensuke Kurihara; Mieko Tamura; Koh-Ichiroh Shohda; Taro Toyota; Kentaro Suzuki; Tadashi Sugawara
Journal:  Nat Chem       Date:  2011-09-04       Impact factor: 24.427

3.  Stable, biocompatible lipid vesicle generation by solvent extraction-based droplet microfluidics.

Authors:  Shia-Yen Teh; Ruba Khnouf; Hugh Fan; Abraham P Lee
Journal:  Biomicrofluidics       Date:  2011-12-09       Impact factor: 2.800

4.  From Never Born Proteins to Minimal Living Cells: two projects in synthetic biology.

Authors:  Pier Luigi Luisi; Cristiano Chiarabelli; Pasquale Stano
Journal:  Orig Life Evol Biosph       Date:  2006-12       Impact factor: 1.950

5.  Structural analyses of a hypothetical minimal metabolism.

Authors:  Toni Gabaldón; Juli Peretó; Francisco Montero; Rosario Gil; Amparo Latorre; Andrés Moya
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

6.  Generic Darwinian selection in catalytic protocell assemblies.

Authors:  Andreea Munteanu; Camille Stephan-Otto Attolini; Steen Rasmussen; Hans Ziock; Ricard V Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

7.  Question 7: biosynthesis of phosphatidic acid in liposome compartments - toward the self-reproduction of minimal cells.

Authors:  Yutetsu Kuruma
Journal:  Orig Life Evol Biosph       Date:  2007-07-25       Impact factor: 1.950

8.  Question 8: bridging the gap between in silico and in vitro approaches to minimal cells.

Authors:  Fabio Mavelli; Kepa Ruiz-Mirazo
Journal:  Orig Life Evol Biosph       Date:  2007-06-28       Impact factor: 1.950

9.  Steps towards the formation of a protocell: the possible role of short peptides.

Authors:  Maya Fishkis
Journal:  Orig Life Evol Biosph       Date:  2007-09-14       Impact factor: 1.950

10.  Stability of model membranes in extreme environments.

Authors:  Trishool Namani; David W Deamer
Journal:  Orig Life Evol Biosph       Date:  2008-06-17       Impact factor: 1.950

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