Literature DB >> 16290250

The biology of intron gain and loss.

Daniel C Jeffares1, Tobias Mourier, David Penny.   

Abstract

Intron density in eukaryote genomes varies by more than three orders of magnitude, so there must have been extensive intron gain and/or intron loss during evolution. A favored and partial explanation for this range of intron densities has been that introns have accumulated stochastically in large eukaryote genomes during their evolution from an intron-poor ancestor. However, recent studies have shown that some eukaryotes lost many introns, whereas others accumulated and/or gained many introns. In this article, we discuss the growing evidence that these differences are subject to selection acting on introns depending on the biology of the organism and the gene involved.

Mesh:

Year:  2005        PMID: 16290250     DOI: 10.1016/j.tig.2005.10.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  107 in total

Review 1.  The falsifiability of the models for the origin of eukaryotes.

Authors:  Matej Vesteg; Juraj Krajčovič
Journal:  Curr Genet       Date:  2011-10-19       Impact factor: 3.886

Review 2.  Intron creation and DNA repair.

Authors:  Hermann Ragg
Journal:  Cell Mol Life Sci       Date:  2010-09-19       Impact factor: 9.261

3.  Evaluation of models of the mechanisms underlying intron loss and gain in Aspergillus fungi.

Authors:  Lei-Ying Zhang; Yu-Fei Yang; Deng-Ke Niu
Journal:  J Mol Evol       Date:  2010-09-23       Impact factor: 2.395

4.  Three distinct modes of intron dynamics in the evolution of eukaryotes.

Authors:  Liran Carmel; Yuri I Wolf; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Res       Date:  2007-05-10       Impact factor: 9.043

5.  Evolutionarily conserved genes preferentially accumulate introns.

Authors:  Liran Carmel; Igor B Rogozin; Yuri I Wolf; Eugene V Koonin
Journal:  Genome Res       Date:  2007-05-10       Impact factor: 9.043

Review 6.  A maximum likelihood method for reconstruction of the evolution of eukaryotic gene structure.

Authors:  Liran Carmel; Igor B Rogozin; Yuri I Wolf; Eugene V Koonin
Journal:  Methods Mol Biol       Date:  2009

7.  Higher frequency of intron loss from the promoter proximally paused genes of Drosophila melanogaster.

Authors:  Li Jiang; Xue-Nan Li; Deng-Ke Niu
Journal:  Fly (Austin)       Date:  2014       Impact factor: 2.160

8.  Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss.

Authors:  Tao Zhu; Deng-Ke Niu
Journal:  BMC Biol       Date:  2013-03-05       Impact factor: 7.431

9.  An overview of the introns-first theory.

Authors:  David Penny; Marc P Hoeppner; Anthony M Poole; Daniel C Jeffares
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

10.  Extensive, recent intron gains in Daphnia populations.

Authors:  Wenli Li; Abraham E Tucker; Way Sung; W Kelley Thomas; Michael Lynch
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.