Literature DB >> 16271886

Activation process of [NiFe] hydrogenase elucidated by high-resolution X-ray analyses: conversion of the ready to the unready state.

Hideaki Ogata1, Shun Hirota, Asuka Nakahara, Hirofumi Komori, Naoki Shibata, Tatsuhisa Kato, Kenji Kano, Yoshiki Higuchi.   

Abstract

Hydrogenases catalyze oxidoreduction of molecular hydrogen and have potential applications for utilizing dihydrogen as an energy source. [NiFe] hydrogenase has two different oxidized states, Ni-A (unready, exhibits a lag phase in reductive activation) and Ni-B (ready). We have succeeded in converting Ni-B to Ni-A with the use of Na2S and O2 and determining the high-resolution crystal structures of both states. Ni-B possesses a monatomic nonprotein bridging ligand at the Ni-Fe active site, whereas Ni-A has a diatomic species. The terminal atom of the bridging species of Ni-A occupies a similar position as C of the exogenous CO in the CO complex (inhibited state). The common features of the enzyme structures at the unready (Ni-A) and inhibited (CO complex) states are proposed. These findings provide useful information on the design of new systems of biomimetic dihydrogen production and fuel cell devices.

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Year:  2005        PMID: 16271886     DOI: 10.1016/j.str.2005.07.018

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  48 in total

1.  Engineering hyperthermophilic archaeon Pyrococcus furiosus to overproduce its cytoplasmic [NiFe]-hydrogenase.

Authors:  Sanjeev K Chandrayan; Patrick M McTernan; R Christopher Hopkins; Junsong Sun; Francis E Jenney; Michael W W Adams
Journal:  J Biol Chem       Date:  2011-12-07       Impact factor: 5.157

2.  A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase.

Authors:  Abbas Abou-Hamdan; Pierre Ceccaldi; Hugo Lebrette; Oscar Gutiérrez-Sanz; Pierre Richaud; Laurent Cournac; Bruno Guigliarelli; Antonio L De Lacey; Christophe Léger; Anne Volbeda; Bénédicte Burlat; Sébastien Dementin
Journal:  J Biol Chem       Date:  2015-02-09       Impact factor: 5.157

3.  Purification, crystallization and preliminary X-ray analysis of the membrane-bound [NiFe] hydrogenase from Allochromatium vinosum.

Authors:  Petra Kellers; Hideaki Ogata; Wolfgang Lubitz
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-07-05

4.  Spin distribution of the H-cluster in the H(ox)-CO state of the [FeFe] hydrogenase from Desulfovibrio desulfuricans: HYSCORE and ENDOR study of (14)N and (13)C nuclear interactions.

Authors:  Alexey Silakov; Brian Wenk; Eduard Reijerse; Simon P J Albracht; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2008-11-15       Impact factor: 3.358

Review 5.  Chemical approaches to detect and analyze protein sulfenic acids.

Authors:  Cristina M Furdui; Leslie B Poole
Journal:  Mass Spectrom Rev       Date:  2013-09-17       Impact factor: 10.946

6.  Crystallization and preliminary X-ray diffraction analysis of membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus.

Authors:  Yasuhito Shomura; Keisuke Hagiya; Ki-Seok Yoon; Hirofumi Nishihara; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-06-30

7.  Redesign of a Copper Storage Protein into an Artificial Hydrogenase.

Authors:  Dhanashree Selvan; Pallavi Prasad; Erik R Farquhar; Yelu Shi; Skyler Crane; Yong Zhang; Saumen Chakraborty
Journal:  ACS Catal       Date:  2019-05-16       Impact factor: 13.084

8.  Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.

Authors:  Sónia Zacarias; Adriana Temporão; Philippe Carpentier; Peter van der Linden; Inês A C Pereira; Pedro M Matias
Journal:  J Biol Inorg Chem       Date:  2020-08-31       Impact factor: 3.358

9.  A kinetic and thermodynamic understanding of O2 tolerance in [NiFe]-hydrogenases.

Authors:  James A Cracknell; Annemarie F Wait; Oliver Lenz; Bärbel Friedrich; Fraser A Armstrong
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-23       Impact factor: 11.205

10.  Probing intermediates in the activation cycle of [NiFe] hydrogenase by infrared spectroscopy: the Ni-SIr state and its light sensitivity.

Authors:  Maria-Eirini Pandelia; Hideaki Ogata; Leslie J Currell; Marco Flores; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2009-07-21       Impact factor: 3.358

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