Literature DB >> 16269406

C to U editing stimulates A to I editing in the anticodon loop of a cytoplasmic threonyl tRNA in Trypanosoma brucei.

Mary Anne T Rubio1, Frank L Ragone, Kirk W Gaston, Michael Ibba, Juan D Alfonzo.   

Abstract

Editing of tRNAs is widespread in nature and either changes the decoding properties or restores the folding of a tRNA. Unlike the phylogenetically disperse adenosine (A) to inosine (I) editing, cytosine (C) to uridine (U) editing has only been previously described in organellar tRNAs. We have shown that cytoplasmic tRNA(Thr)(AGU) undergoes two distinct editing events in the anticodon loop: C to U and A to I. In vivo, every inosine-containing tRNA(Thr) is also C to U edited at position 32. In vitro, C to U editing stimulates conversion of A to I at the wobble base. Although the in vivo and in vitro requirements differ, in both cases, the C to U change plays a key role in A to I editing. Due to an unusual abundance of A34-containing tRNAs, our results also suggest that the unedited and edited tRNAs are functional, each dedicated to decoding a specific threonine codon. C to U editing of cytoplasmic tRNA expands the editing repertoire in eukaryotic cells, and when coupled to A to I changes, leads to an interrelation between editing sites.

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Year:  2005        PMID: 16269406     DOI: 10.1074/jbc.M510136200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  31 in total

Review 1.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

Review 2.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

Review 3.  Distribution and frequencies of post-transcriptional modifications in tRNAs.

Authors:  Magdalena A Machnicka; Anna Olchowik; Henri Grosjean; Janusz M Bujnicki
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

4.  The absence of A-to-I editing in the anticodon of plant cytoplasmic tRNA (Arg) ACG demands a relaxation of the wobble decoding rules.

Authors:  Carolin A Aldinger; Anne-Katrin Leisinger; Kirk W Gaston; Patrick A Limbach; Gabor L Igloi
Journal:  RNA Biol       Date:  2012-08-24       Impact factor: 4.652

5.  Identification of enzymes for adenosine-to-inosine editing and discovery of cytidine-to-uridine editing in nucleus-encoded transfer RNAs of Arabidopsis.

Authors:  Wenbin Zhou; Daniel Karcher; Ralph Bock
Journal:  Plant Physiol       Date:  2014-10-14       Impact factor: 8.340

6.  From canonical to modified nucleotides: balancing translation and metabolism.

Authors:  Federica Accornero; Robert L Ross; Juan D Alfonzo
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-09-16       Impact factor: 8.250

7.  Pathogenic mechanism of a human mitochondrial tRNAPhe mutation associated with myoclonic epilepsy with ragged red fibers syndrome.

Authors:  Jiqiang Ling; Hervé Roy; Daoming Qin; Mary Anne T Rubio; Juan D Alfonzo; Kurt Fredrick; Michael Ibba
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

8.  Induced resistance to methionyl-tRNA synthetase inhibitors in Trypanosoma brucei is due to overexpression of the target.

Authors:  Ranae M Ranade; J Robert Gillespie; Sayaka Shibata; Christophe L M J Verlinde; Erkang Fan; Wim G J Hol; Frederick S Buckner
Journal:  Antimicrob Agents Chemother       Date:  2013-04-15       Impact factor: 5.191

9.  An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA.

Authors:  Mary Anne T Rubio; Irena Pastar; Kirk W Gaston; Frank L Ragone; Christian J Janzen; George A M Cross; F Nina Papavasiliou; Juan D Alfonzo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-01       Impact factor: 11.205

10.  Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: evidence of transposition leading to an uncharacteristically large mitochondrial genome.

Authors:  David R Smith; Marlene Snyder
Journal:  J Mol Evol       Date:  2007-10-06       Impact factor: 2.395

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