| Literature DB >> 16269091 |
José R Valverde1, Javier Alonso, Itziar Palacios, Angel Pestaña.
Abstract
BACKGROUND: Retinoblastoma, a prototype of hereditary cancer, is the most common intraocular tumour in children and potential cause of blindness from therapeutic eye ablation, second tumours in germ line carrier's survivors, and even death when left untreated. The molecular scanning of RB1 in search of germ line mutations lead to the publication of more than 900 mutations whose knowledge is important for genetic counselling and the characterization of phenotypic-genotypic relationships.Entities:
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Year: 2005 PMID: 16269091 PMCID: PMC1298292 DOI: 10.1186/1471-2156-6-53
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
Distribution of germ line and somatic RB1 mutations by phenotype of the patients.
| Germ line | Somatic | Total | |
| Bilateral sporadic | 424 | 24 | 448 |
| Bilateral familiar | 99 | 99 | |
| Low penetrance | 27 | 27 | |
| Unilateral sporadic | 52 | 131 | 183 |
| Unilateral familiar | 6 | 6 | |
| Not reported | 145 | 145 | |
| Total | 753 | 155 | 908 |
Number of entries by mutation type as compared with HGMD data. Statistical analysis of distinct RBGMdbDB vs. HGMD using χ2 test.
| All mutations | Distinct mutations | Distinct mutat. | |||||
| RBGMdb | % | RBGMdb | % | HGMD | % | χ2 test | |
| Nonsense | 395 | 42.4 | 93 | 18.6 | 5840 | 12.6 | P < 0.0001 |
| Missense | 81 | 8.7 | 50 | 10.0 | 22940 | 49.6 | P < 0.0001 |
| Splicing | 194 | 20.8 | 111 | 22.2 | 4771 | 10.3 | P < 0.0001 |
| Regulatory | 7 | 0.7 | 5 | 1.0 | 626 | 1.4 | P = 0.6267 |
| Small ins/del | 255 | 27.3 | 241 | 48.2 | 12076 | 26.1 | P < 0.0001 |
| Total | 932 | 500 | 46253 | ||||
Figure 1Mutational hot spots in RB1. The number of entries found for each mutation is represented against the modified genomic nucleotide. Description of high recurrent mutations is shown.
Figure 2Spectrum of RB1 mutations by exon. The number of entries for each type of mutation is distributed by exon and adjacent 5' and 3' intronic sequences.
Figure 3Spectrum of RB1 mutations by country of origin. Distribution of mutations in Canada and two groups of nations and statistical comparison with all mutations in RBGMdb. (*) and (**) stand for P < 0.05 and 0.01, respectively).
Age at diagnosis in retinoblastoma patients according to phenotype and type of mutation. Statistical analysis using the Welch's unpaired t test.
| Phenotype | Frameshift | Nonsense | Missense | Splicing | SP vs. NS-MS-FS |
| Unilateral | 21.1 | 26.0 | 23.7 | 26.7 | P = 0.7237 |
| Bilateral | 9.5 | 11.8 | 9.4 | 19.3 | P = 0.0025 |
| All | 12.4 | 15.6 | 16.0 | 21.8 | P = 0.0044 |
| Unilateral vs. Bilateral | P = 0.0073 | P = 0.0147 | P = 0.3321 |
Molecular basis of low penetrance retinoblastoma
| Type of mutation | Number of LP families | Description of mutations and frequency a | Functional consequences |
| Regulatory | 3 | -198G>A (1/2) | Low expression of normal Rb protein |
| MS point mutations | 12 | R661W (8/20) | Partial inactivation of Rb protein |
| Inframe deletion | 3 | Del:N480 (1/1) | Partial inactivation of Rb protein |
| Splicing | 10 | 607+1G>T (4/11) | Alternative splicing and/or unessential exon skipping resulting in low expression or partial inactivation of Rb protein |
| NS point mutation | 1 | Q675X (1/1) | Alternative splicing involving the stop codon |
aRatio of mutations found in LP families vs. all mutations in the database is shown in brackets