Literature DB >> 21654082

Splicing aberrations caused by constitutional RB1 gene mutations in retinoblastoma.

Vidya Latha Parsam1, Mohammed Javed Ali, Santosh G Honavar, Geeta K Vemuganti, Chitra Kannabiran.   

Abstract

Analysis of RB1 mRNA from blood leukocytes of patients with retinoblastoma identified the effects of mutations involving consensus splice site, exonic substitution and whole-exon deletions identified in genomic DNA of these patients. In addition, this study identified mutations in cases in which no mutations were detectable in the genomic DNA. One proband had mutation at the canonical splice site at +5 position of IVS22, and analysis of the transcripts in this family revealed skipping of exon 22 in three members of this family. In one proband, a missense substitution of c.652T greater than G (g.56897T greater than G; Leu218Val) in exon 7 led to splicing aberrations involving deletions of exons 7 and 8, suggesting the formation of a cryptic splice site. In two probands with no detectable changes in the genomic DNA upon screening of RB1 exons and flanking intronic sequences, transcripts were found to have deletions of exon 6 in one, and exons 21 and 22 in another family. In two probands, RNA analysis confirmed genomic deletions involving one or more exons. This study reveals novel effects of RB1 mutations on splicing and suggests the utility of RNA analysis as an adjunct to mutational screening of genomic DNA in retinoblastoma.

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Year:  2011        PMID: 21654082     DOI: 10.1007/s12038-011-9062-9

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  22 in total

1.  Patterns of missplicing caused by RB1 gene mutations in patients with retinoblastoma and association with phenotypic expression.

Authors:  Katherine Zhang; Inga Nowak; Diane Rushlow; Brenda L Gallie; Dietmar R Lohmann
Journal:  Hum Mutat       Date:  2008-04       Impact factor: 4.878

2.  A BRCA1 nonsense mutation causes exon skipping.

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Journal:  Am J Hum Genet       Date:  1998-03       Impact factor: 11.025

3.  A deep intronic mutation in the RB1 gene leads to intronic sequence exonisation.

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Journal:  Eur J Hum Genet       Date:  2007-02-14       Impact factor: 4.246

4.  Mutations affecting mRNA splicing are the most common molecular defects in patients with neurofibromatosis type 1.

Authors:  E Ars; E Serra; J García; H Kruyer; A Gaona; C Lázaro; X Estivill
Journal:  Hum Mol Genet       Date:  2000-01-22       Impact factor: 6.150

5.  Mutations in the RB1 gene and their effects on transcription.

Authors:  J M Dunn; R A Phillips; X Zhu; A Becker; B L Gallie
Journal:  Mol Cell Biol       Date:  1989-11       Impact factor: 4.272

6.  A comprehensive, sensitive and economical approach for the detection of mutations in the RB1 gene in retinoblastoma.

Authors:  Vidya Latha Parsam; Chitra Kannabiran; Santosh Honavar; Geeta K Vemuganti; Mohammad Javed Ali
Journal:  J Genet       Date:  2009-12       Impact factor: 1.166

7.  The skipping of constitutive exons in vivo induced by nonsense mutations.

Authors:  H C Dietz; D Valle; C A Francomano; R J Kendzior; R E Pyeritz; G R Cutting
Journal:  Science       Date:  1993-01-29       Impact factor: 47.728

8.  Mutation and cancer: statistical study of retinoblastoma.

Authors:  A G Knudson
Journal:  Proc Natl Acad Sci U S A       Date:  1971-04       Impact factor: 11.205

9.  The human retinoblastoma gene is imprinted.

Authors:  Deniz Kanber; Tea Berulava; Ole Ammerpohl; Diana Mitter; Julia Richter; Reiner Siebert; Bernhard Horsthemke; Dietmar Lohmann; Karin Buiting
Journal:  PLoS Genet       Date:  2009-12-24       Impact factor: 5.917

10.  Comprehensive screening for constitutional RB1 mutations by DHPLC and QMPSF.

Authors:  C Houdayer; M Gauthier-Villars; A Laugé; S Pagès-Berhouet; C Dehainault; V Caux-Moncoutier; P Karczynski; M Tosi; F Doz; L Desjardins; J Couturier; D Stoppa-Lyonnet
Journal:  Hum Mutat       Date:  2004-02       Impact factor: 4.878

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  4 in total

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Journal:  Ocul Immunol Inflamm       Date:  2012-08       Impact factor: 3.070

2.  Familial retinoblastoma due to intronic LINE-1 insertion causes aberrant and noncanonical mRNA splicing of the RB1 gene.

Authors:  Carlos Rodríguez-Martín; Florencia Cidre; Ana Fernández-Teijeiro; Gema Gómez-Mariano; Leticia de la Vega; Patricia Ramos; Ángel Zaballos; Sara Monzón; Javier Alonso
Journal:  J Hum Genet       Date:  2016-01-14       Impact factor: 3.172

3.  A one base pair deletion in the canine ATP13A2 gene causes exon skipping and late-onset neuronal ceroid lipofuscinosis in the Tibetan terrier.

Authors:  Anne Wöhlke; Ute Philipp; Patricia Bock; Andreas Beineke; Peter Lichtner; Thomas Meitinger; Ottmar Distl
Journal:  PLoS Genet       Date:  2011-10-13       Impact factor: 5.917

4.  Spectrum of mutations in the RB1 gene in Vietnamese patients with retinoblastoma.

Authors:  Nguyen Cong Kiet; Le Thai Khuong; Do Duc Minh; Nguyen Huynh Minh Quan; Phan Thi Xinh; Nguyen Ngoc Chau Trang; Nguyen Thanh Luan; Nguyen Minh Khai; Hoang Anh Vu
Journal:  Mol Vis       Date:  2019-04-04       Impact factor: 2.367

  4 in total

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