Literature DB >> 16258037

Frequency modulation atomic force microscopy reveals individual intermediates associated with each unfolded I27 titin domain.

Michael J Higgins1, John E Sader, Suzanne P Jarvis.   

Abstract

In this study, we apply a dynamic atomic force microscopy (AFM) technique, frequency modulation (FM) detection, to the mechanical unfolding of single titin I27 domains and make comparisons with measurements made using the AFM contact or static mode method. Static mode measurements revealed the well-known force transition occurring at 100-120 pN in the first unfolding peak, which was less clear, or more often absent, in the subsequent unfolding peaks. In contrast, some FM-AFM curves clearly resolved a force transition associated with each of the unfolding peaks irrespective of the number of observed unfolded domains. As expected for FM-AFM, the frequency shift response of the main unfolding peaks and their intermediates could only be detected when the oscillation amplitudes used were smaller than the interaction lengths being measured. It was also shown that the forces measured for the dynamical interaction of the FM-AFM technique were significantly lower than those measured using the static mode. This study highlights the potential for using dynamic AFM for investigating biological interactions, including protein unfolding and the detection of novel unfolding intermediates.

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Substances:

Year:  2005        PMID: 16258037      PMCID: PMC1367068          DOI: 10.1529/biophysj.105.066571

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Mechanical and chemical unfolding of a single protein: a comparison.

Authors:  M Carrion-Vazquez; A F Oberhauser; S B Fowler; P E Marszalek; S E Broedel; J Clarke; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

2.  Versatile cloning system for construction of multimeric proteins for use in atomic force microscopy.

Authors:  Annette Steward; José Luis Toca-Herrera; Jane Clarke
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

3.  Force spectroscopy with a small dithering of AFM tip: a method of direct and continuous measurement of the spring constant of single molecules and molecular complexes.

Authors:  Lilia A Chtcheglova; George T Shubeita; Sergey K Sekatskii; Giovanni Dietler
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

4.  A simple method for probing the mechanical unfolding pathway of proteins in detail.

Authors:  Robert B Best; Susan B Fowler; Jose L Toca-Herrera; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-06       Impact factor: 11.205

5.  What can atomic force microscopy tell us about protein folding?

Authors:  Robert B Best; Jane Clarke
Journal:  Chem Commun (Camb)       Date:  2002-02-07       Impact factor: 6.222

6.  Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering.

Authors:  Susan B Fowler; Robert B Best; José L Toca Herrera; Trevor J Rutherford; Annette Steward; Emanuele Paci; Martin Karplus; Jane Clarke
Journal:  J Mol Biol       Date:  2002-09-27       Impact factor: 5.469

7.  Dynamics of a partially stretched protein molecule studied using an atomic force microscope.

Authors:  Takaharu Okajima; Hideo Arakawa; Mohammad Taufiq Alam; Hiroshi Sekiguchi; Atsushi Ikai
Journal:  Biophys Chem       Date:  2004-01-01       Impact factor: 2.352

8.  Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins.

Authors:  Harald Janovjak; Daniel J Müller; Andrew D L Humphris
Journal:  Biophys J       Date:  2004-12-01       Impact factor: 4.033

9.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

10.  Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation.

Authors:  H Lu; B Isralewitz; A Krammer; V Vogel; K Schulten
Journal:  Biophys J       Date:  1998-08       Impact factor: 4.033

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  12 in total

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Authors:  Ricardo Garcia; Elena T Herruzo
Journal:  Nat Nanotechnol       Date:  2012-04-01       Impact factor: 39.213

2.  Entropy and barrier-controlled fluctuations determine conformational viscoelasticity of single biomolecules.

Authors:  Bhavin S Khatri; Masaru Kawakami; Katherine Byrne; D Alastair Smith; Tom C B McLeish
Journal:  Biophys J       Date:  2006-12-08       Impact factor: 4.033

3.  Viscoelastic study of the mechanical unfolding of a protein by AFM.

Authors:  Masaru Kawakami; Katherine Byrne; David J Brockwell; Sheena E Radford; D Alastair Smith
Journal:  Biophys J       Date:  2006-05-12       Impact factor: 4.033

Review 4.  Pulling single molecules of titin by AFM--recent advances and physiological implications.

Authors:  Wolfgang A Linke; Anika Grützner
Journal:  Pflugers Arch       Date:  2007-12-06       Impact factor: 3.657

5.  Secondary and tertiary structure elasticity of titin Z1Z2 and a titin chain model.

Authors:  Eric H Lee; Jen Hsin; Olga Mayans; Klaus Schulten
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

6.  Can Dissipative Properties of Single Molecules Be Extracted from a Force Spectroscopy Experiment?

Authors:  Fabrizio Benedetti; Yulia Gazizova; Andrzej J Kulik; Piotr E Marszalek; Dmitry V Klinov; Giovanni Dietler; Sergey K Sekatskii
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

7.  Quantifying multiscale noise sources in single-molecule time series.

Authors:  Christopher P Calderon; Nolan C Harris; Ching-Hwa Kiang; Dennis D Cox
Journal:  J Phys Chem B       Date:  2009-01-08       Impact factor: 2.991

8.  Analyzing single-molecule manipulation experiments.

Authors:  Christopher P Calderon; Nolan C Harris; Ching-Hwa Kiang; Dennis D Cox
Journal:  J Mol Recognit       Date:  2009 Sep-Oct       Impact factor: 2.137

9.  Quantifying DNA melting transitions using single-molecule force spectroscopy.

Authors:  Christopher P Calderon; Wei-Hung Chen; Kuan-Jiuh Lin; Nolan C Harris; Ching-Hwa Kiang
Journal:  J Phys Condens Matter       Date:  2009-01-21       Impact factor: 2.333

10.  Nanomechanics of full-length nebulin: an elastic strain gauge in the skeletal muscle sarcomere.

Authors:  Vamsi K Yadavalli; Jeffrey G Forbes; Kuan Wang
Journal:  Langmuir       Date:  2009-07-07       Impact factor: 3.882

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