Literature DB >> 16254362

Effect of macromolecular crowding agents on human immunodeficiency virus type 1 capsid protein assembly in vitro.

Marta del Alamo1, Germán Rivas, Mauricio G Mateu.   

Abstract

Previous studies on the self-assembly of capsid protein CA of human immunodeficiency virus type 1 (HIV-1) in vitro have provided important insights on the structure and assembly of the mature HIV-1 capsid. However, CA polymerization in vitro was previously observed to occur only at very high ionic strength. Here, we have analyzed the effects on CA assembly in vitro of adding unrelated, inert macromolecules (crowding agents), aimed at mimicking the crowded (very high macromolecular effective concentration) environment within the HIV-1 virion. Crowding agents induced fast and efficient polymerization of CA even at low (close to physiological) ionic strength. The hollow cylinders thus assembled were indistinguishable in shape and dimensions from those formed in dilute protein solutions at high ionic strength. However, two important differences were noted: (i) disassembly by dilution of the capsid-like particles was undetectable at very high ionic strength, but occurred rapidly at low ionic strength in the presence of a crowding agent, and (ii) a variant CA from a presumed infectious HIV-1 with mutations at the CA dimerization interface was unable to assemble at any ionic strength in the absence of a crowding agent; in contrast, this mutation allowed efficient assembly, even at low ionic strength, when a crowding agent was used. The use of a low ionic strength and inert macromolecules to mimic the crowded environment inside the HIV-1 virion may lead to a better in vitro evaluation of the effects of conditions, mutations or/and other molecules, including potential antiviral compounds, on HIV-1 capsid assembly, stability and disassembly.

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Year:  2005        PMID: 16254362      PMCID: PMC1280224          DOI: 10.1128/JVI.79.22.14271-14281.2005

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  39 in total

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Journal:  Curr Opin Struct Biol       Date:  2000-02       Impact factor: 6.809

Review 2.  The HIV-1 assembly machine.

Authors:  H G Göttlinger
Journal:  AIDS       Date:  2001       Impact factor: 4.177

3.  HIV-1 capsid protein forms spherical (immature-like) and tubular (mature-like) particles in vitro: structure switching by pH-induced conformational changes.

Authors:  L S Ehrlich; T Liu; S Scarlata; B Chu; C A Carter
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

Review 4.  Macromolecular crowding: obvious but underappreciated.

Authors:  R J Ellis
Journal:  Trends Biochem Sci       Date:  2001-10       Impact factor: 13.807

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Authors:  S Li; C P Hill; W I Sundquist; J T Finch
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

6.  Macromolecular crowding accelerates amyloid formation by human apolipoprotein C-II.

Authors:  Danny M Hatters; Allen P Minton; Geoffrey J Howlett
Journal:  J Biol Chem       Date:  2001-12-18       Impact factor: 5.157

7.  The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences.

Authors:  A P Minton
Journal:  Mol Cell Biochem       Date:  1983       Impact factor: 3.396

8.  Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication.

Authors:  Brett M Forshey; Uta von Schwedler; Wesley I Sundquist; Christopher Aiken
Journal:  J Virol       Date:  2002-06       Impact factor: 5.103

9.  Conformational stability of dimeric and monomeric forms of the C-terminal domain of human immunodeficiency virus-1 capsid protein.

Authors:  Mauricio G Mateu
Journal:  J Mol Biol       Date:  2002-04-26       Impact factor: 5.469

10.  Self-assembly in vitro of purified CA-NC proteins from Rous sarcoma virus and human immunodeficiency virus type 1.

Authors:  S Campbell; V M Vogt
Journal:  J Virol       Date:  1995-10       Impact factor: 5.103

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  44 in total

1.  Generalized fundamental measure theory for atomistic modeling of macromolecular crowding.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-26

2.  Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin.

Authors:  Loren Stagg; Shao-Qing Zhang; Margaret S Cheung; Pernilla Wittung-Stafshede
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-16       Impact factor: 11.205

3.  Free energy of sickle hemoglobin polymerization: a scaled-particle treatment for use with dextran as a crowding agent.

Authors:  Zenghui Liu; Weijun Weng; Robert M Bookchin; Virgilio L Lew; Frank A Ferrone
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

4.  Critical role of conserved hydrophobic residues within the major homology region in mature retroviral capsid assembly.

Authors:  John G Purdy; John M Flanagan; Ira J Ropson; Kristen E Rennoll-Bankert; Rebecca C Craven
Journal:  J Virol       Date:  2008-04-09       Impact factor: 5.103

5.  Structural and dynamical characterization of tubular HIV-1 capsid protein assemblies by solid state nuclear magnetic resonance and electron microscopy.

Authors:  Bo Chen; Robert Tycko
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

Review 6.  Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

Authors:  Huan-Xiang Zhou; Germán Rivas; Allen P Minton
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

7.  Exploring the parameter space of complex self-assembly through virus capsid models.

Authors:  Blake Sweeney; Tiequan Zhang; Russell Schwartz
Journal:  Biophys J       Date:  2007-10-05       Impact factor: 4.033

8.  Envelope lipids regulate the in vitro assembly of the HIV-1 capsid.

Authors:  Francisco N Barrera; Marta del Alamo; Mauricio G Mateu; José L Neira
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

9.  Parameter effects on binding chemistry in crowded media using a two-dimensional stochastic off-lattice model.

Authors:  Byoungkoo Lee; Philip R LeDuc; Russell Schwartz
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-10-14

10.  Conserved cysteines in Mason-Pfizer monkey virus capsid protein are essential for infectious mature particle formation.

Authors:  Růžena Píchalová; Tibor Füzik; Barbora Vokatá; Michaela Rumlová; Manuel Llano; Alžběta Dostálková; Ivana Křížová; Tomáš Ruml; Pavel Ulbrich
Journal:  Virology       Date:  2018-06-12       Impact factor: 3.616

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