Literature DB >> 18212015

Free energy of sickle hemoglobin polymerization: a scaled-particle treatment for use with dextran as a crowding agent.

Zenghui Liu1, Weijun Weng, Robert M Bookchin, Virgilio L Lew, Frank A Ferrone.   

Abstract

Fundamental to the analysis of protein polymerization is the free energy of association, typically determined from solubility. It has been previously shown that concentrated 70 kDa dextran lowers the solubility of sickle hemoglobin, due to molecular crowding, and provides a useful ranking tool for the effects of inhibitors and molecular modifications. Because hemoglobin occupies a substantial volume as well, crowding effects of both hemoglobin and dextran contribute to the nonideality of the solution. We show how scaled-particle theory can be used to account for both types of crowding, thus allowing the determination of solubility in the absence of dextran, given data measured in its presence. The approach adopted approximates dextran as a sphere with a volume that decreases as the concentration of dextran increases. We use an asymptotic relation to describe the volume, which decreases nearly linearly by a factor of two over the range studied, from 60 to 230 mg/ml. This compression is similar to previously observed compression of sephadex beads and ficoll solutions. In the limit of low hemoglobin concentrations, the theory reduces to the previously-used approach of Ogston. Our method therefore provides a means of measuring the free energy of association of molecules that occupy significant volume fractions, even when assisted by the crowding of dextran and we present a tabulation of all known free energies of polymerization of sickle hemoglobin measured in the presence of dextran.

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Year:  2008        PMID: 18212015      PMCID: PMC2292385          DOI: 10.1529/biophysj.107.117465

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

1.  Effect of dextran on protein stability and conformation attributed to macromolecular crowding.

Authors:  Kenji Sasahara; Peter McPhie; Allen P Minton
Journal:  J Mol Biol       Date:  2003-02-28       Impact factor: 5.469

2.  The hydrodynamic radii of macromolecules and their effect on red blood cell aggregation.

Authors:  J K Armstrong; R B Wenby; H J Meiselman; T C Fisher
Journal:  Biophys J       Date:  2004-09-10       Impact factor: 4.033

Review 3.  Crowding and the polymerization of sickle hemoglobin.

Authors:  Frank A Ferrone; Maria A Rotter
Journal:  J Mol Recognit       Date:  2004 Sep-Oct       Impact factor: 2.137

4.  Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: macromolecular crowding and protein stability revisited.

Authors:  Allen P Minton
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

5.  The molecular compression of dextran.

Authors:  A G Ogston; B N Preston
Journal:  Biochem J       Date:  1979-10-01       Impact factor: 3.857

6.  Enhanced inhibition of polymerization of sickle cell hemoglobin in the presence of recombinant mutants of human fetal hemoglobin with substitutions at position 43 in the gamma-chain.

Authors:  Ming F Tam; Jun Chen; Tsuey-Chyi S Tam; Ching-Hsuan Tsai; Tong-Jian Shen; Virgil Simplaceanu; Timothy N Feinstein; Doug Barrick; Chien Ho
Journal:  Biochemistry       Date:  2005-09-13       Impact factor: 3.162

Review 7.  Ficoll and dextran vs. globular proteins as probes for testing glomerular permselectivity: effects of molecular size, shape, charge, and deformability.

Authors:  Daniele Venturoli; Bengt Rippe
Journal:  Am J Physiol Renal Physiol       Date:  2005-04

8.  Determination of glomerular size-selectivity in the normal rat with Ficoll.

Authors:  J D Oliver; S Anderson; J L Troy; B M Brenner; W H Deen
Journal:  J Am Soc Nephrol       Date:  1992-08       Impact factor: 10.121

9.  The effect of macromolecular crowding on protein aggregation and amyloid fibril formation.

Authors:  Larissa A Munishkina; Elisa M Cooper; Vladimir N Uversky; Anthony L Fink
Journal:  J Mol Recognit       Date:  2004 Sep-Oct       Impact factor: 2.137

10.  Linkage of interactions in sickle hemoglobin fiber assembly: inhibitory effect emanating from mutations in the AB region of the alpha-chain is annulled by a mutation at its EF corner.

Authors:  Rajamani Sudha; Lavanya Anantharaman; Mylavarapu V S Sivaram; Neda Mirsamadi; Devapriya Choudhury; Nirmal K Lohiya; Rasik B Gupta; Rajendra P Roy
Journal:  J Biol Chem       Date:  2004-02-23       Impact factor: 5.157

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  11 in total

1.  Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences.

Authors:  Jyotica Batra; Ke Xu; Sanbo Qin; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

2.  The effects of macromolecular crowding on the mechanical stability of protein molecules.

Authors:  Jian-Min Yuan; Chia-Lin Chyan; Huan-Xiang Zhou; Tse-Yu Chung; Haibo Peng; Guanghui Ping; Guoliang Yang
Journal:  Protein Sci       Date:  2008-09-09       Impact factor: 6.725

3.  Power-law dependence of the melting temperature of ubiquitin on the volume fraction of macromolecular crowders.

Authors:  Matthias M Waegele; Feng Gai
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

4.  Contrasting factors on the kinetic path to protein complex formation diminish the effects of crowding agents.

Authors:  Yael Phillip; Michal Harel; Ruth Khait; Sanbo Qin; Huan-Xiang Zhou; Gideon Schreiber
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

5.  The role of macromolecular crowding in the evolution of lens crystallins with high molecular refractive index.

Authors:  Huaying Zhao; M Teresa Magone; Peter Schuck
Journal:  Phys Biol       Date:  2011-05-12       Impact factor: 2.583

6.  The molecular refractive function of lens γ-Crystallins.

Authors:  Huaying Zhao; Patrick H Brown; M Teresa Magone; Peter Schuck
Journal:  J Mol Biol       Date:  2011-06-12       Impact factor: 5.469

7.  Nonadditive effects of mixed crowding on protein stability.

Authors:  Jyotica Batra; Ke Xu; Huan-Xiang Zhou
Journal:  Proteins       Date:  2009-10

8.  Crowding effects of membrane proteins.

Authors:  Huan-Xiang Zhou
Journal:  J Phys Chem B       Date:  2009-06-11       Impact factor: 2.991

9.  An FFT-based method for modeling protein folding and binding under crowding: benchmarking on ellipsoidal and all-atom crowders.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  J Chem Theory Comput       Date:  2013-10-01       Impact factor: 6.006

Review 10.  Wanted: scalable tracers for diffusion measurements.

Authors:  Michael J Saxton
Journal:  J Phys Chem B       Date:  2014-11-03       Impact factor: 2.991

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