Literature DB >> 16242990

Nucleotide analogues to investigate RNA structure and function.

Subha R Das1, Robert Fong, Joseph A Piccirilli.   

Abstract

RNA plays an essential cellular role in nearly every aspect of the transmission and expression of genetic information, including regulatory roles that have significance for cellular development. Access to RNA bearing synthetic modifications has allowed biological chemists to probe deep into the inner workings of cellular processes. Here, we describe recent advances in harnessing the power of nucleotide analogues to obtain mechanistic and biological insights into RNA structure, function and dynamics.

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Year:  2005        PMID: 16242990     DOI: 10.1016/j.cbpa.2005.10.009

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  14 in total

Review 1.  Novel modifications in RNA.

Authors:  Kelly Phelps; Alexi Morris; Peter A Beal
Journal:  ACS Chem Biol       Date:  2011-12-23       Impact factor: 5.100

2.  Synthesis of 2'-N-methylamino-2'-deoxyguanosine and 2'-N,N-dimethylamino-2'-deoxyguanosine and their incorporation into RNA by phosphoramidite chemistry.

Authors:  Qing Dai; Raghuvir Sengupta; Shirshendu K Deb; Joseph A Piccirilli
Journal:  J Org Chem       Date:  2011-10-03       Impact factor: 4.354

3.  A rearrangement of the guanosine-binding site establishes an extended network of functional interactions in the Tetrahymena group I ribozyme active site.

Authors:  Marcello Forconi; Raghuvir N Sengupta; Joseph A Piccirilli; Daniel Herschlag
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

4.  Charged nucleobases and their potential for RNA catalysis.

Authors:  Jennifer L Wilcox; Amarpreet K Ahluwalia; Philip C Bevilacqua
Journal:  Acc Chem Res       Date:  2011-07-06       Impact factor: 22.384

5.  2'-Fluoro substituents can mimic native 2'-hydroxyls within structured RNA.

Authors:  Marcello Forconi; Jason P Schwans; Rishi H Porecha; Raghuvir N Sengupta; Joseph A Piccirilli; Daniel Herschlag
Journal:  Chem Biol       Date:  2011-08-26

6.  Tightening of active site interactions en route to the transition state revealed by single-atom substitution in the guanosine-binding site of the Tetrahymena group I ribozyme.

Authors:  Marcello Forconi; Rishi H Porecha; Joseph A Piccirilli; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2011-05-03       Impact factor: 15.419

Review 7.  Base ionization and ligand binding: how small ribozymes and riboswitches gain a foothold in a protein world.

Authors:  Joseph A Liberman; Joseph E Wedekind
Journal:  Curr Opin Struct Biol       Date:  2011-04-27       Impact factor: 6.809

8.  A new usage of functionalized oligodeoxynucleotide probe for site-specific modification of a guanine base within RNA.

Authors:  Kazumitsu Onizuka; Yosuke Taniguchi; Shigeki Sasaki
Journal:  Nucleic Acids Res       Date:  2010-01-31       Impact factor: 16.971

9.  Hidden ribozymes in eukaryotic genome sequence.

Authors:  Sean P Ryder
Journal:  F1000 Biol Rep       Date:  2010-07-14

10.  Structure and function converge to identify a hydrogen bond in a group I ribozyme active site.

Authors:  Marcello Forconi; Raghuvir N Sengupta; Mao-Chin Liu; Alan C Sartorelli; Joseph A Piccirilli; Daniel Herschlag
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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