Literature DB >> 16234928

Transient species involved in catalytic dioxygen/peroxide activation by hemoproteins: possible involvement of protonated Compound I species.

Radu Silaghi-Dumitrescu1, Chris E Cooper.   

Abstract

Interaction of hemoproteins with peroxide leads in several cases to transient formation of ferric peroxo, ferric hydroperoxo, and "high-valent", formally Fev, oxo or hydroxo Compound species. Here, density functional calculations on ferric peroxo, ferric hydroperoxo, Compound and protonated Compound heme active site models are reported. The theoretical results, including calculated isotropic Fermi contact couplings and anisotropic spin dipole couplings, are found to generally correlate well with experimental EPR/ENDOR data. Hydrogen bonding and solvation affect the ferric-peroxo/ferrous-superoxo electromerism. The transition between the two electromers appears smooth, but neither hydrogen bonding to up to two water molecules, nor solvation appear able to dramatically alter the redox state of the superoxo ligand or of the iron. The presence of almost one full unpaired electron on the iron and of one full unpaired electron on the dioxygenic ligand in the "ferric-peroxo" state suggests a possible description of non-protonated "ferric-peroxo" as {ferric-superoxo+porphyrin radical}. Emerging from the DFT data is the possibility that a protonated Compound has already been detected in ENDOR experiments on cytochrome P450. The general feasibility of a protonated Compound in P450 monooxygenases is probed in light of these findings. To encompass the multiple mechanisms available in P450 for substrate oxidation, we define "mechanistic promiscuity" as the feature allowing an enzyme to perform the same reaction, with the same product, using more than one mechanism.

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Year:  2005        PMID: 16234928     DOI: 10.1039/b505440k

Source DB:  PubMed          Journal:  Dalton Trans        ISSN: 1477-9226            Impact factor:   4.390


  5 in total

1.  Probing the oxyferrous and catalytically active ferryl states of Amphitrite ornata dehaloperoxidase by cryoreduction and EPR/ENDOR spectroscopy. Detection of compound I.

Authors:  Roman Davydov; Robert L Osborne; Muralidharan Shanmugam; Jing Du; John H Dawson; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

2.  Ferryl haem protonation gates peroxidatic reactivity in globins.

Authors:  Radu Silaghi-Dumitrescu; Brandon J Reeder; Peter Nicholls; Chris E Cooper; Michael T Wilson
Journal:  Biochem J       Date:  2007-05-01       Impact factor: 3.857

3.  A computational analysis of electromerism in hemoprotein Fe(I) models.

Authors:  Radu Silaghi-Dumitrescu; Sergei V Makarov
Journal:  J Biol Inorg Chem       Date:  2010-05-01       Impact factor: 3.358

4.  Structure and quantum chemical characterization of chloroperoxidase compound 0, a common reaction intermediate of diverse heme enzymes.

Authors:  Karin Kühnel; Etienne Derat; James Terner; Sason Shaik; Ilme Schlichting
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

5.  Nitrite binding to globins: linkage isomerism, EPR silence and reductive chemistry.

Authors:  Radu Silaghi-Dumitrescu; Dimitri A Svistunenko; Daniela Cioloboc; Cristina Bischin; Florina Scurtu; Chris E Cooper
Journal:  Nitric Oxide       Date:  2014-08-27       Impact factor: 4.427

  5 in total

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