Literature DB >> 16228602

Cyanobacterial signature genes.

Kirt A Martin1, Janet L Siefert, Sailaja Yerrapragada, Yue Lu, Thomas Z McNeill, Pedro A Moreno, George M Weinstock, William R Widger, George E Fox.   

Abstract

A comparison of 8 cyanobacterial genomes reveals that there are 181 shared genes that do not have obvious orthologs in other bacteria. These signature genes define aspects of the genotype that are uniquely cyanobacterial. Approximately 25% of these genes have been associated with some function. These signature genes may or may not be involved in photosynthesis but likely they will be in many cases. In addition, several examples of widely conserved gene order involving two or more signature genes were observed. This suggests there may be regulatory processes that have been preserved throughout the long history of the cyanobacterial phenotype. The results presented here will be especially useful because they identify which of the many genes of unassigned function are likely to be of the greatest interest.

Year:  2003        PMID: 16228602     DOI: 10.1023/A:1023990402346

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  24 in total

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5.  Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.

Authors:  M Pellegrini; E M Marcotte; M J Thompson; D Eisenberg; T O Yeates
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Review 6.  Genome evolution in enteric bacteria.

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Authors:  J L Siefert; K A Martin; F Abdi; W R Widger; G E Fox
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8.  Gene order is not conserved in bacterial evolution.

Authors:  A R Mushegian; E V Koonin
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9.  Predicting protein function by genomic context: quantitative evaluation and qualitative inferences.

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  12 in total

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Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

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6.  Genome comparison using Gene Ontology (GO) with statistical testing.

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9.  Signature proteins for the major clades of Cyanobacteria.

Authors:  Radhey S Gupta; Divya W Mathews
Journal:  BMC Evol Biol       Date:  2010-01-25       Impact factor: 3.260

10.  Signature genes as a phylogenomic tool.

Authors:  Bas E Dutilh; Berend Snel; Thijs J G Ettema; Martijn A Huynen
Journal:  Mol Biol Evol       Date:  2008-05-19       Impact factor: 16.240

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