Literature DB >> 16224117

Toward an artificial cell based on gene expression in vesicles.

Vincent Noireaux1, Roy Bar-Ziv, Jeremy Godefroy, Hanna Salman, Albert Libchaber.   

Abstract

We present a new experimental approach to build an artificial cell using the translation machinery of a cell-free expression system as the hardware and a DNA synthetic genome as the software. This approach, inspired by the self-replicating automata of von Neumann, uses cytoplasmic extracts, encapsulated in phospholipid vesicles, to assemble custom-made genetic circuits to develop the functions of a minimal cell. Although this approach can find applications, especially in biotechnology, the primary goal is to understand how a DNA algorithm can be designed to build an operating system that has some of the properties of life. We provide insights on this cell-free approach as well as new results to transform step by step a long-lived vesicle bioreactor into an artificial cell. We show how the green fluorescent protein can be anchored to the membrane and we give indications of a possible insertion mechanism of integral membrane proteins. With vesicles composed of different phospholipids, the fusion protein alpha-hemolysin-eGFP can be expressed to reveal patterns on the membrane. The specific degradation complex ClpXP from E. coli is introduced to create a sink for the synthesized proteins. Perspectives and subsequent limitations of this approach are discussed.

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Year:  2005        PMID: 16224117     DOI: 10.1088/1478-3975/2/3/P01

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  41 in total

1.  Stable, biocompatible lipid vesicle generation by solvent extraction-based droplet microfluidics.

Authors:  Shia-Yen Teh; Ruba Khnouf; Hugh Fan; Abraham P Lee
Journal:  Biomicrofluidics       Date:  2011-12-09       Impact factor: 2.800

2.  Synthetic Turing protocells: vesicle self-reproduction through symmetry-breaking instabilities.

Authors:  Javier Macía; Ricard V Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

Review 3.  Synthetic protocell biology: from reproduction to computation.

Authors:  Ricard V Solé; Andreea Munteanu; Carlos Rodriguez-Caso; Javier Macía
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

Review 4.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

Review 5.  The role of biomacromolecular crowding, ionic strength, and physicochemical gradients in the complexities of life's emergence.

Authors:  Jan Spitzer; Bert Poolman
Journal:  Microbiol Mol Biol Rev       Date:  2009-06       Impact factor: 11.056

6.  Multi-dimensional studies of synthetic genetic promoters enabled by microfluidic impact printing.

Authors:  Jinzhen Fan; Fernando Villarreal; Brent Weyers; Yunfeng Ding; Kuo Hao Tseng; Jiannan Li; Baoqing Li; Cheemeng Tan; Tingrui Pan
Journal:  Lab Chip       Date:  2017-06-27       Impact factor: 6.799

7.  On-chip density-based purification of liposomes.

Authors:  Siddharth Deshpande; Anthony Birnie; Cees Dekker
Journal:  Biomicrofluidics       Date:  2017-05-08       Impact factor: 2.800

8.  Model for biological communication in a nanofabricated cell-mimic driven by stochastic resonance.

Authors:  David K Karig; Piro Siuti; Roy D Dar; Scott T Retterer; Mitchel J Doktycz; Michael L Simpson
Journal:  Nano Commun Netw       Date:  2011-03       Impact factor: 2.947

9.  Controlling Secretion in Artificial Cells with a Membrane AND Gate.

Authors:  Claire E Hilburger; Miranda L Jacobs; Kamryn R Lewis; Justin A Peruzzi; Neha P Kamat
Journal:  ACS Synth Biol       Date:  2019-05-14       Impact factor: 5.110

10.  Stochastic simulation and analysis of biomolecular reaction networks.

Authors:  John M Frazier; Yaroslav Chushak; Brent Foy
Journal:  BMC Syst Biol       Date:  2009-06-17
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