Literature DB >> 16223263

Fusion of mass spectrometry-based metabolomics data.

Age K Smilde1, Mariët J van der Werf, Sabina Bijlsma, Bianca J C van der Werff-van der Vat, Renger H Jellema.   

Abstract

A general method is presented for combining mass spectrometry-based metabolomics data. Such data are becoming more and more abundant, and proper tools for fusing these types of data sets are needed. Fusion of metabolomics data leads to a comprehensive view on the metabolome of an organism or biological system. The ideas presented draw upon established techniques in data analysis. Hence, they are also widely applicable to other types of X-omics data provided there is a proper pretreatment of the data. These issues are discussed using a real-life metabolomics data set from a microbial fermentation process.

Mesh:

Year:  2005        PMID: 16223263     DOI: 10.1021/ac051080y

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  77 in total

1.  Macronutrient, Energy, and Bile Acid Metabolism Pathways Altered Following a Physiological Meal Challenge, Relative to Fasting, among Guatemalan Adults.

Authors:  Elaine A Yu; Tianwei Yu; Dean P Jones; Reynaldo Martorell; Manuel Ramirez-Zea; Aryeh D Stein
Journal:  J Nutr       Date:  2020-08-01       Impact factor: 4.798

2.  Metabolic profiling based on LC/MS to evaluate unintended effects of transgenic rice with cry1Ac and sck genes.

Authors:  Yuwei Chang; Chunxia Zhao; Zhen Zhu; Zeming Wu; Jia Zhou; Yanni Zhao; Xin Lu; Guowang Xu
Journal:  Plant Mol Biol       Date:  2012-01-22       Impact factor: 4.076

3.  Simultaneous analysis of plasma and CSF by NMR and hierarchical models fusion.

Authors:  Agnieszka Smolinska; Joram M Posma; Lionel Blanchet; Kirsten A M Ampt; Amos Attali; Tinka Tuinstra; Theo Luider; Marek Doskocz; Paul J Michiels; Frederic C Girard; Lutgarde M C Buydens; Sybren S Wijmenga
Journal:  Anal Bioanal Chem       Date:  2012-03-07       Impact factor: 4.142

Review 4.  Characterizing proteins of unknown function: orphan cytochrome p450 enzymes as a paradigm.

Authors:  F Peter Guengerich; Zhongmei Tang; S Giovanna Salamanca-Pinzón; Qian Cheng
Journal:  Mol Interv       Date:  2010-06

5.  Untargeted analysis of mass spectrometry data for elucidation of metabolites and function of enzymes.

Authors:  Raymundo Sanchez-Ponce; F Peter Guengerich
Journal:  Anal Chem       Date:  2007-04-05       Impact factor: 6.986

Review 6.  Metabolic networks: how to identify key components in the regulation of metabolism and growth.

Authors:  Mark Stitt; Ronan Sulpice; Joost Keurentjes
Journal:  Plant Physiol       Date:  2009-12-11       Impact factor: 8.340

7.  Lipid characterization of individual porcine oocytes by dual mode DESI-MS and data fusion.

Authors:  Valentina Pirro; Paolo Oliveri; Christina Ramires Ferreira; Andrés Felipe González-Serrano; Zoltan Machaty; Robert Graham Cooks
Journal:  Anal Chim Acta       Date:  2014-08-11       Impact factor: 6.558

8.  Simultaneous Improvement in the Precision, Accuracy, and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains.

Authors:  Jing Tang; Jianbo Fu; Yunxia Wang; Yongchao Luo; Qingxia Yang; Bo Li; Gao Tu; Jiajun Hong; Xuejiao Cui; Yuzong Chen; Lixia Yao; Weiwei Xue; Feng Zhu
Journal:  Mol Cell Proteomics       Date:  2019-05-16       Impact factor: 5.911

9.  Integrating functional genomics data using maximum likelihood based simultaneous component analysis.

Authors:  Robert A van den Berg; Iven Van Mechelen; Tom F Wilderjans; Katrijn Van Deun; Henk A L Kiers; Age K Smilde
Journal:  BMC Bioinformatics       Date:  2009-10-16       Impact factor: 3.169

10.  A structured overview of simultaneous component based data integration.

Authors:  Katrijn Van Deun; Age K Smilde; Mariët J van der Werf; Henk A L Kiers; Iven Van Mechelen
Journal:  BMC Bioinformatics       Date:  2009-08-11       Impact factor: 3.169

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