Literature DB >> 16220344

Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).

Wang Feng1, Wang Hongbin, Liu Bing, Wang Jinfa.   

Abstract

Superoxide dismutases (SODs) are ubiquitous metalloenzymes in aerobic organisms that play a crucial role in protecting organisms against ROS. Here, we report the molecular cloning and functional characterization of a novel alternatively spliced variant of the iron-superoxide dismutase gene, OsFe-SODb, from a rice panicle cDNA library. The alternative splicing event occurred in the fourth exon of the OsFe-SOD gene, and led to the translation of two isoforms of different sizes. The 5' flanking region of the OsFe-SOD was cloned and many cis-acting regulatory elements were found that are involved in light responsiveness, including a G-box and an I-box. RT-PCR analysis showed that the two alternative forms of OsFe-SOD were expressed in both the vegetative and reproductive tissues of Cpslo17. Moreover, accumulation of both isoforms was upregulated by light induction. In addition, the alternative splicing of OsFe-SOD mRNA was sensitive to low temperature. High yield production of the two recombinant OsFe-SOD isoforms was achieved in Escherichia coli. SOD assays showed that C-terminal truncation in OsFe-SODb did not result in a loss of SOD enzyme activity.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16220344     DOI: 10.1007/s00299-005-0030-4

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  32 in total

1.  ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites.

Authors:  O Emanuelsson; H Nielsen; G von Heijne
Journal:  Protein Sci       Date:  1999-05       Impact factor: 6.725

2.  SPLICE SITE SELECTION IN PLANT PRE-mRNA SPLICING.

Authors:  J. W. S. Brown; C. G. Simpson
Journal:  Annu Rev Plant Physiol Plant Mol Biol       Date:  1998-06

3.  U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize.

Authors:  C H Ko; V Brendel; R D Taylor; V Walbot
Journal:  Plant Mol Biol       Date:  1998-03       Impact factor: 4.076

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  Internal AU-rich elements modulate activity of two competing 3' splice sites in plant nuclei.

Authors:  H Merritt; A J McCullough; M A Schuler
Journal:  Plant J       Date:  1997-10       Impact factor: 6.417

6.  Molecular cloning and characterization of a cDNA for an iron-superoxide dismutase in rice (Oryza sativa L.).

Authors:  H Kaminaka; S Morita; M Tokumoto; H Yokoyama; T Masumura; K Tanaka
Journal:  Biosci Biotechnol Biochem       Date:  1999-02       Impact factor: 2.043

7.  Genomic structure of the gene for copper/zinc-superoxide dismutase in rice.

Authors:  A Sakamoto; T Okumura; H Ohsuga; K Tanaka
Journal:  FEBS Lett       Date:  1992-04-20       Impact factor: 4.124

8.  Alternative splicing of a novel diacylglycerol kinase in tomato leads to a calmodulin-binding isoform.

Authors:  W A Snedden; E Blumwald
Journal:  Plant J       Date:  2000-11       Impact factor: 6.417

9.  Destruction of tryptophan residues by hydrogen peroxide in iron-superoxide dismutase.

Authors:  F Yamakura
Journal:  Biochem Biophys Res Commun       Date:  1984-07-31       Impact factor: 3.575

10.  Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.

Authors:  S M Hebsgaard; P G Korning; N Tolstrup; J Engelbrecht; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

View more
  10 in total

1.  Enhanced salt tolerance of transgenic poplar plants expressing a manganese superoxide dismutase from Tamarix androssowii.

Authors:  Yu Cheng Wang; Guan Zheng Qu; Hong Yan Li; Ying Jie Wu; Chao Wang; Gui Feng Liu; Chuan Ping Yang
Journal:  Mol Biol Rep       Date:  2010-02       Impact factor: 2.316

Review 2.  Superoxide dismutase--mentor of abiotic stress tolerance in crop plants.

Authors:  Sarvajeet Singh Gill; Naser A Anjum; Ritu Gill; Sandeep Yadav; Mirza Hasanuzzaman; Masayuki Fujita; Panchanand Mishra; Surendra C Sabat; Narendra Tuteja
Journal:  Environ Sci Pollut Res Int       Date:  2015-04-30       Impact factor: 4.223

3.  Alternative splicing studies of the reactive oxygen species gene network in Populus reveal two isoforms of high-isoelectric-point superoxide dismutase.

Authors:  Vaibhav Srivastava; Manoj Kumar Srivastava; Kamel Chibani; Robert Nilsson; Nicolas Rouhier; Michael Melzer; Gunnar Wingsle
Journal:  Plant Physiol       Date:  2009-01-28       Impact factor: 8.340

Review 4.  Antioxidant Defenses in Plants with Attention to Prunus and Citrus spp.

Authors:  Milvia Luisa Racchi
Journal:  Antioxidants (Basel)       Date:  2013-11-26

5.  Genome-wide identification and characterization of the superoxide dismutase gene family in Musa acuminata cv. Tianbaojiao (AAA group).

Authors:  Xin Feng; Zhongxiong Lai; Yuling Lin; Gongti Lai; Conglong Lian
Journal:  BMC Genomics       Date:  2015-10-20       Impact factor: 3.969

6.  Genome-wide characterization and expression analyses of superoxide dismutase (SOD) genes in Gossypium hirsutum.

Authors:  Wei Wang; Xiaopei Zhang; Fenni Deng; Rui Yuan; Fafu Shen
Journal:  BMC Genomics       Date:  2017-05-12       Impact factor: 3.969

7.  Genome-Wide Identification and Transcriptional Expression Analysis of Cucumber Superoxide Dismutase (SOD) Family in Response to Various Abiotic Stresses.

Authors:  Yong Zhou; Lifang Hu; Hao Wu; Lunwei Jiang; Shiqiang Liu
Journal:  Int J Genomics       Date:  2017-07-20       Impact factor: 2.326

8.  High-quality reference transcriptome construction improves RNA-seq quantification in Oryza sativa indica.

Authors:  Nagesh Srikakulam; Ganapathi Sridevi; Gopal Pandi
Journal:  Front Genet       Date:  2022-09-29       Impact factor: 4.772

9.  The Populus superoxide dismutase gene family and its responses to drought stress in transgenic poplar overexpressing a pine cytosolic glutamine synthetase (GS1a).

Authors:  Juan Jesús Molina-Rueda; Chung Jui Tsai; Edward G Kirby
Journal:  PLoS One       Date:  2013-02-22       Impact factor: 3.240

10.  In Silico Study of Superoxide Dismutase Gene Family in Potato and Effects of Elevated Temperature and Salicylic Acid on Gene Expression.

Authors:  Jelena Rudić; Milan B Dragićević; Ivana Momčilović; Ana D Simonović; Danijel Pantelić
Journal:  Antioxidants (Basel)       Date:  2022-02-28
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.