Literature DB >> 15012228

SPLICE SITE SELECTION IN PLANT PRE-mRNA SPLICING.

J. W. S. Brown1, C. G. Simpson.   

Abstract

The purpose of this review is to highlight the unique and common features of splice site selection in plants compared with the better understood yeast and vertebrate systems. A key question in plant splicing is the role of AU sequences and how and at what stage they are involved in spliceosome assembly. Clearly, intronic U- or AU-rich and exonic GC- and AG-rich elements can influence splice site selection and splicing efficiency and are likely to bind proteins. It is becoming clear that splicing of a particular intron depends on a fine balance in the "strength" of the multiple intron signals involved in splice site selection. Individual introns contain varying strengths of signals and what is critical to splicing of one intron may be of less importance to the splicing of another. Thus, small changes to signals may severely disrupt splicing or have little or no effect depending on the overall sequence context of a specific intron/exon organization.

Entities:  

Year:  1998        PMID: 15012228     DOI: 10.1146/annurev.arplant.49.1.77

Source DB:  PubMed          Journal:  Annu Rev Plant Physiol Plant Mol Biol        ISSN: 1040-2519


  54 in total

1.  A splice site mutant of maize activates cryptic splice sites, elicits intron inclusion and exon exclusion, and permits branch point elucidation.

Authors:  S Lal; J H Choi; J R Shaw; L C Hannah
Journal:  Plant Physiol       Date:  1999-10       Impact factor: 8.340

2.  UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation.

Authors:  M H Lambermon; G G Simpson; D A Wieczorek Kirk; M Hemmings-Mieszczak; U Klahre; W Filipowicz
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

3.  Requirements for mini-exon inclusion in potato invertase mRNAs provides evidence for exon-scanning interactions in plants.

Authors:  C G Simpson; P E Hedley; J A Watters; G P Clark; C McQuade; G C Machray; J W Brown
Journal:  RNA       Date:  2000-03       Impact factor: 4.942

4.  Test of the combinatorial model of intron recognition in a native maize gene.

Authors:  M J Latijnhouwers; C F Pairoba; V Brendel; V Walbot; J C Carle-Urisote
Journal:  Plant Mol Biol       Date:  1999-11       Impact factor: 4.076

5.  Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants.

Authors:  G C Shukla; R A Padgett
Journal:  RNA       Date:  1999-04       Impact factor: 4.942

6.  Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a mini-exon.

Authors:  Craig G Simpson; Graham Thow; Gillian P Clark; S Nikki Jennings; Jenny A Watters; John W S Brown
Journal:  RNA       Date:  2002-01       Impact factor: 4.942

7.  Molecular characterization of nucleus-localized RNA-binding proteins from higher plants.

Authors:  Martin Landsberger; Zdravko J Lorković; Ralf Oelmüller
Journal:  Plant Mol Biol       Date:  2002-03       Impact factor: 4.076

8.  The maize genome contains a helitron insertion.

Authors:  Shailesh K Lal; Michael J Giroux; Volker Brendel; C Eduardo Vallejos; L Curtis Hannah
Journal:  Plant Cell       Date:  2003-02       Impact factor: 11.277

9.  Low temperature promotes intron retention in two e-cor genes of durum wheat.

Authors:  Anna Maria Mastrangelo; Sara Belloni; Samantha Barilli; Benedetto Ruperti; Natale Di Fonzo; Antonio Michele Stanca; Luigi Cattivelli
Journal:  Planta       Date:  2005-01-22       Impact factor: 4.116

10.  SPLICING FACTOR1 Is Important in Chloroplast Development under Cold Stress.

Authors:  Yajuan Zhu; Wenjuan Wu; Wei Shao; Jingli Chen; Xiaoning Shi; Xiaoyu Ma; Yong-Zhen Xu; Weihua Huang; Jirong Huang
Journal:  Plant Physiol       Date:  2020-07-30       Impact factor: 8.340

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