Literature DB >> 16214334

Short, local duplications in eukaryotic genomes.

Elizabeth E Thomas1.   

Abstract

Short, local duplications lead to an increase in the local copy number of a 1-100 bp sequence motif. They are usually unstable and evolve rapidly. When they involve a functional sequence such as a transcription factor binding site or a protein-protein interaction domain, they can drive phenotypic diversity. Short, local duplications have been implicated in the dramatic morphological differences among different dog breeds, and in the differences in social structure between two sister species of voles. Several human diseases and disorders are also caused by this class of duplication, which encompasses microsatellites, minisatellites and doublets.

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Year:  2005        PMID: 16214334     DOI: 10.1016/j.gde.2005.09.008

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  11 in total

1.  Comparative analysis of distinct non-coding characteristics potentially contributing to the divergence of human tissue-specific genes.

Authors:  Qianli Huang; Jiaming Guo; Qq Ge; Jesse Li-Ling; Xueping Chen; Fei Ma
Journal:  Genetica       Date:  2008-09-25       Impact factor: 1.082

2.  Natural insertions in rice commonly form tandem duplications indicative of patch-mediated double-strand break induction and repair.

Authors:  Justin N Vaughn; Jeffrey L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-23       Impact factor: 11.205

3.  Repair of adjacent single-strand breaks is often accompanied by the formation of tandem sequence duplications in plant genomes.

Authors:  Simon Schiml; Friedrich Fauser; Holger Puchta
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-15       Impact factor: 11.205

4.  Survey sequencing and radiation hybrid mapping to construct comparative maps.

Authors:  Christophe Hitte; Ewen F Kirkness; Elaine A Ostrander; Francis Galibert
Journal:  Methods Mol Biol       Date:  2008

5.  Sequence-based estimation of minisatellite and microsatellite repeat variability.

Authors:  Matthieu Legendre; Nathalie Pochet; Theodore Pak; Kevin J Verstrepen
Journal:  Genome Res       Date:  2007-10-31       Impact factor: 9.043

6.  Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples.

Authors:  Richard V Espley; Cyril Brendolise; David Chagné; Sumathi Kutty-Amma; Sol Green; Richard Volz; Jo Putterill; Henk J Schouten; Susan E Gardiner; Roger P Hellens; Andrew C Allan
Journal:  Plant Cell       Date:  2009-01-16       Impact factor: 11.277

7.  Duplication count distributions in DNA sequences.

Authors:  Suzanne S Sindi; Brian R Hunt; James A Yorke
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-12-11

8.  A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites.

Authors:  Brian T Naughton; Eugene Fratkin; Serafim Batzoglou; Douglas L Brutlag
Journal:  Nucleic Acids Res       Date:  2006-10-13       Impact factor: 16.971

9.  Prevalent RNA recognition motif duplication in the human genome.

Authors:  Yihsuan S Tsai; Shawn M Gomez; Zefeng Wang
Journal:  RNA       Date:  2014-03-25       Impact factor: 4.942

10.  Comparative analysis of the phytocyanin gene family in 10 plant species: a focus on Zea mays.

Authors:  Jun Cao; Xiang Li; Yueqing Lv; Lina Ding
Journal:  Front Plant Sci       Date:  2015-07-13       Impact factor: 5.753

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