Literature DB >> 16209589

The thermodynamics of phosphate versus phosphorothioate ester hydrolysis.

Jamie Purcell1, Alvan C Hengge.   

Abstract

Phosphorothioate esters are phosphate esters in which one of the nonbridging oxygen atoms has been replaced by sulfur. In the comparative hydrolysis reactions of phosphorothioate and phosphate esters, the sulfur substitution accelerates the rates of the monoesters while slowing the rates of diesters and of triesters. Previously measured enthalpies and entropies of activation for the hydrolysis reactions of the monoesters, p-nitrophenyl phosphate and p-nitrophenyl phosphorothioate, were compared to the activation parameters measured herein for the diesters, ethyl p-nitrophenyl phosphate and ethyl p-nitrophenyl phosphorothioate, and the triesters, diethyl p-nitrophenyl phosphate and diethyl p-nitrophenyl phosphorothioate. A consistent trend of a greater DeltaH++ for the phosphorothioate analogue was found in all three classes of ester. In the monoester case, a more positive DeltaS++ arising from a mechanistic difference (D(N) + A(N) for the phosphorothioate versus A(N)D(N) for the phosphate) compensates, resulting in a lower DeltaG++ for the phosphorothioate monoester. Spectroscopic investigations indicate there is no significant difference in bond order to the leaving group in phosphates, as compared to their phosphorothioate analogues, ruling this out as a contribution to the consistently higher enthalpies of activation.

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Year:  2005        PMID: 16209589     DOI: 10.1021/jo0511997

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  10 in total

Review 1.  Probing enzyme phosphoester interactions by combining mutagenesis and chemical modification of phosphate ester oxygens.

Authors:  James T Stivers; Rajesh Nagarajan
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

2.  Detection and Quantification of RNA Phosphorothioate Modifications Using Mass Spectrometry.

Authors:  Ying Wu; Ya Ying Zheng; Qishan Lin; Jia Sheng
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2020-09

3.  Theoretical investigation of the neutral hydrolysis of diethyl 4-nitrophenyl phosphate (paraoxon) in aqueous solution.

Authors:  Marcelo A Chagas; Eufrásia S Pereira; Júlio Cosme S Da Silva; Willian R Rocha
Journal:  J Mol Model       Date:  2018-08-29       Impact factor: 1.810

4.  Origin of iodine preferential attack at sulfur in phosphorothioate and subsequent P-O or P-S bond dissociation.

Authors:  Qiang Huang; Ga Young Lee; Jiayi Li; Chuan Wang; Rosalinda L Zhao; Zixin Deng; K N Houk; Yi-Lei Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-19       Impact factor: 12.779

5.  Inverse thio effects in the hepatitis delta virus ribozyme reveal that the reaction pathway is controlled by metal ion charge density.

Authors:  Pallavi Thaplyal; Abir Ganguly; Sharon Hammes-Schiffer; Philip C Bevilacqua
Journal:  Biochemistry       Date:  2015-03-23       Impact factor: 3.162

6.  Active Site Hydrophobicity and the Convergent Evolution of Paraoxonase Activity in Structurally Divergent Enzymes: The Case of Serum Paraoxonase 1.

Authors:  David Blaha-Nelson; Dennis M Krüger; Klaudia Szeler; Moshe Ben-David; Shina Caroline Lynn Kamerlin
Journal:  J Am Chem Soc       Date:  2017-01-11       Impact factor: 15.419

7.  Cooperative Electrostatic Interactions Drive Functional Evolution in the Alkaline Phosphatase Superfamily.

Authors:  Alexandre Barrozo; Fernanda Duarte; Paul Bauer; Alexandra T P Carvalho; Shina C L Kamerlin
Journal:  J Am Chem Soc       Date:  2015-07-10       Impact factor: 15.419

Review 8.  Promiscuity in the Enzymatic Catalysis of Phosphate and Sulfate Transfer.

Authors:  Anna Pabis; Fernanda Duarte; Shina C L Kamerlin
Journal:  Biochemistry       Date:  2016-05-26       Impact factor: 3.162

9.  Probing the mechanisms for the selectivity and promiscuity of methyl parathion hydrolase.

Authors:  Miha Purg; Anna Pabis; Florian Baier; Nobuhiko Tokuriki; Colin Jackson; Shina Caroline Lynn Kamerlin
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-11-13       Impact factor: 4.226

10.  Similar Active Sites and Mechanisms Do Not Lead to Cross-Promiscuity in Organophosphate Hydrolysis: Implications for Biotherapeutic Engineering.

Authors:  Miha Purg; Mikael Elias; Shina Caroline Lynn Kamerlin
Journal:  J Am Chem Soc       Date:  2017-11-21       Impact factor: 15.419

  10 in total

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