Literature DB >> 16201755

Radical phosphate transfer mechanism for the thiamin diphosphate- and FAD-dependent pyruvate oxidase from Lactobacillus plantarum. Kinetic coupling of intercofactor electron transfer with phosphate transfer to acetyl-thiamin diphosphate via a transient FAD semiquinone/hydroxyethyl-ThDP radical pair.

Kai Tittmann1, Georg Wille, Ralph Golbik, Annett Weidner, Sandro Ghisla, Gerhard Hübner.   

Abstract

The thiamin diphosphate (ThDP)- and flavin adenine dinucleotide (FAD)-dependent pyruvate oxidase from Lactobacillus plantarum catalyses the conversion of pyruvate, inorganic phosphate, and oxygen to acetyl-phosphate, carbon dioxide, and hydrogen peroxide. Central to the catalytic sequence, two reducing equivalents are transferred from the resonant carbanion/enamine forms of alpha-hydroxyethyl-ThDP to the adjacent flavin cofactor over a distance of approximately 7 A, followed by the phosphorolysis of the thereby formed acetyl-ThDP. Pre-steady-state and steady-state kinetics using time-resolved spectroscopy and a 1H NMR-based intermediate analysis indicate that both processes are kinetically coupled. In the presence of phosphate, intercofactor electron-transfer (ET) proceeds with an apparent first-order rate constant of 78 s(-1) and is kinetically gated by the preceding formation of the tetrahedral substrate-ThDP adduct 2-lactyl-ThDP and its decarboxylation. No transient flavin radicals are detectable in the reductive half-reaction. In contrast, when phosphate is absent, ET occurs in two discrete steps with apparent rate constants of 81 and 3 s(-1) and transient formation of a flavin semiquinone/hydroxyethyl-ThDP radical pair. Temperature dependence analysis according to the Marcus theory identifies the second step, the slow radical decay to be a true ET reaction. The redox potentials of the FAD(ox)/FAD(sq) (E1 = -37 mV) and FAD(sq)/FAD(red) (E2 = -87 mV) redox couples in the absence and presence of phosphate are identical. Both the Marcus analysis and fluorescence resonance energy-transfer studies using the fluorescent N3'-pyridyl-ThDP indicate the same cofactor distance in the presence or absence of phosphate. We deduce that the exclusive 10(2)-10(3)-fold rate enhancement of the second ET step is rather due to the nucleophilic attack of phosphate on the kinetically stabilized hydroxyethyl-ThDP radical resulting in a low-potential anion radical adduct than phosphate in a docking site being part of a through-bonded ET pathway in a stepwise mechanism of ET and phosphorolysis. Thus, LpPOX would constitute the first example of a radical-based phosphorolysis mechanism in biochemistry.

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Year:  2005        PMID: 16201755     DOI: 10.1021/bi051058z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

1.  EPR spectroscopic and computational characterization of the hydroxyethylidene-thiamine pyrophosphate radical intermediate of pyruvate:ferredoxin oxidoreductase.

Authors:  Steven O Mansoorabadi; Javier Seravalli; Cristina Furdui; Vladimir Krymov; Gary J Gerfen; Tadhg P Begley; Jonathan Melnick; Stephen W Ragsdale; George H Reed
Journal:  Biochemistry       Date:  2006-06-13       Impact factor: 3.162

2.  Crystallization and preliminary X-ray diffraction analysis of full-length and proteolytically activated pyruvate oxidase from Escherichia coli.

Authors:  Annett Weidner; Piotr Neumann; Georg Wille; Milton T Stubbs; Kai Tittmann
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-02-23

3.  Transient intermediates in enzymology, 1964-2008.

Authors:  Perry Allen Frey
Journal:  J Biol Chem       Date:  2015-03-09       Impact factor: 5.157

4.  Unexpected tautomeric equilibria of the carbanion-enamine intermediate in pyruvate oxidase highlight unrecognized chemical versatility of thiamin.

Authors:  Danilo Meyer; Piotr Neumann; Eline Koers; Hanno Sjuts; Stefan Lüdtke; George M Sheldrick; Ralf Ficner; Kai Tittmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-22       Impact factor: 11.205

Review 5.  Metal centers in the anaerobic microbial metabolism of CO and CO2.

Authors:  Güneş Bender; Elizabeth Pierce; Jeffrey A Hill; Joseph E Darty; Stephen W Ragsdale
Journal:  Metallomics       Date:  2011-06-06       Impact factor: 4.526

6.  Crystal structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism.

Authors:  Ryuichiro Suzuki; Takane Katayama; Byung-Jun Kim; Takayoshi Wakagi; Hirofumi Shoun; Hisashi Ashida; Kenji Yamamoto; Shinya Fushinobu
Journal:  J Biol Chem       Date:  2010-08-24       Impact factor: 5.157

Review 7.  Experimental observation of thiamin diphosphate-bound intermediates on enzymes and mechanistic information derived from these observations.

Authors:  Frank Jordan; Natalia S Nemeria
Journal:  Bioorg Chem       Date:  2005-04-01       Impact factor: 5.275

8.  Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from Escherichia coli.

Authors:  Piotr Neumann; Annett Weidner; Andreas Pech; Milton T Stubbs; Kai Tittmann
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-06       Impact factor: 11.205

9.  The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis.

Authors:  Ella Czarina Magat Juan; Md Mominul Hoque; Md Tofazzal Hossain; Tamotsu Yamamoto; Shigeyuki Imamura; Kaoru Suzuki; Takeshi Sekiguchi; Akio Takénaka
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-10-20

10.  Magnesium-Dependent Promotion of H2O2 Production Increases Ecological Competitiveness of Oral Commensal Streptococci.

Authors:  X Cheng; S Redanz; P Treerat; H Qin; D Choi; X Zhou; X Xu; J Merritt; J Kreth
Journal:  J Dent Res       Date:  2020-03-20       Impact factor: 6.116

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