Literature DB >> 16188489

Shining light on signaling and metabolic networks by genetically encoded biosensors.

Sylvie Lalonde1, David W Ehrhardt, Wolf B Frommer.   

Abstract

Fluorescent labels have revolutionized cell biology. Signaling intermediates and metabolites can be measured in real time with subcellular spatial resolution. Most of these sensors are based on fluorescent proteins, and many report fluorescence resonance energy transfer. Because the biosensors are genetically encoded, a toolbox for addressing cell biological questions at the systems level is now available. Fluorescent biosensors are able to determine the localization of proteins and their dynamics, to reveal the cellular and subcellular localization of the respective interactions and activities, and to provide complementary data on the steady state levels of ions, metabolites, and signaling intermediates with high temporal and spatial resolution. They represent the basis for cell-based high-throughput assays that are necessary for a systems perspective on plant cell function.

Mesh:

Year:  2005        PMID: 16188489      PMCID: PMC2740940          DOI: 10.1016/j.pbi.2005.09.015

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  66 in total

1.  Genetically encoded indicators of cellular calcium dynamics based on troponin C and green fluorescent protein.

Authors:  Nicola Heim; Oliver Griesbeck
Journal:  J Biol Chem       Date:  2004-01-24       Impact factor: 5.157

Review 2.  The mechanisms of vesicle budding and fusion.

Authors:  Juan S Bonifacino; Benjamin S Glick
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

Review 3.  FRET imaging.

Authors:  Elizabeth A Jares-Erijman; Thomas M Jovin
Journal:  Nat Biotechnol       Date:  2003-11       Impact factor: 54.908

Review 4.  Designing biosensors for Rho family proteins--deciphering the dynamics of Rho family GTPase activation in living cells.

Authors:  Olivier Pertz; Klaus M Hahn
Journal:  J Cell Sci       Date:  2004-03-15       Impact factor: 5.285

5.  An improved cyan fluorescent protein variant useful for FRET.

Authors:  Mark A Rizzo; Gerald H Springer; Butch Granada; David W Piston
Journal:  Nat Biotechnol       Date:  2004-02-29       Impact factor: 54.908

6.  Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein.

Authors:  Stéphanie Cabantous; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  Nat Biotechnol       Date:  2004-12-05       Impact factor: 54.908

Review 7.  Protein localization studies in the age of 'Omics'.

Authors:  Nancy A O'Rourke; Tobias Meyer; Grischa Chandy
Journal:  Curr Opin Chem Biol       Date:  2005-02       Impact factor: 8.822

8.  A fluorescent probe designed for studying protein conformational change.

Authors:  Bruce E Cohen; Arnd Pralle; XiaoJie Yao; Gayathri Swaminath; Chris S Gandhi; Yuh Nung Jan; Brian K Kobilka; Ehud Y Isacoff; Lily Y Jan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-18       Impact factor: 11.205

9.  Quantitative imaging of single live cells reveals spatiotemporal dynamics of multistep signaling events of chemoattractant gradient sensing in Dictyostelium.

Authors:  Xuehua Xu; Martin Meier-Schellersheim; Xuanmao Jiao; Lauren E Nelson; Tian Jin
Journal:  Mol Biol Cell       Date:  2004-11-24       Impact factor: 4.138

10.  A ratiometric expressible FRET sensor for phosphoinositides displays a signal change in highly dynamic membrane structures in fibroblasts.

Authors:  Gregor Cicchetti; Melinda Biernacki; Jessica Farquharson; Philip G Allen
Journal:  Biochemistry       Date:  2004-02-24       Impact factor: 3.162

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  30 in total

Review 1.  Comparative physiology of elemental distributions in plants.

Authors:  Simon Conn; Matthew Gilliham
Journal:  Ann Bot       Date:  2010-04-21       Impact factor: 4.357

Review 2.  Systems approaches to identifying gene regulatory networks in plants.

Authors:  Terri A Long; Siobhan M Brady; Philip N Benfey
Journal:  Annu Rev Cell Dev Biol       Date:  2008       Impact factor: 13.827

3.  Fluorescent Labeling and Confocal Microcopy of Plastids and Stromules.

Authors:  Maureen R Hanson; Patricia L Conklin; Amirali Sattarzadeh
Journal:  Methods Mol Biol       Date:  2021

4.  Rapid metabolism of glucose detected with FRET glucose nanosensors in epidermal cells and intact roots of Arabidopsis RNA-silencing mutants.

Authors:  Karen Deuschle; Bhavna Chaudhuri; Sakiko Okumoto; Ida Lager; Sylvie Lalonde; Wolf B Frommer
Journal:  Plant Cell       Date:  2006-08-25       Impact factor: 11.277

5.  Live imaging of inorganic phosphate in plants with cellular and subcellular resolution.

Authors:  Pallavi Mukherjee; Swayoma Banerjee; Amanda Wheeler; Lyndsay A Ratliff; Sonia Irigoyen; L Rene Garcia; Steve W Lockless; Wayne K Versaw
Journal:  Plant Physiol       Date:  2015-01-26       Impact factor: 8.340

6.  Visualization of intracellular transport of vesicular stomatitis virus nucleocapsids in living cells.

Authors:  Subash C Das; Debasis Nayak; You Zhou; Asit K Pattnaik
Journal:  J Virol       Date:  2006-07       Impact factor: 5.103

7.  Apollo-NADP(+): a spectrally tunable family of genetically encoded sensors for NADP(+).

Authors:  William D Cameron; Cindy V Bui; Ashley Hutchinson; Peter Loppnau; Susanne Gräslund; Jonathan V Rocheleau
Journal:  Nat Methods       Date:  2016-02-15       Impact factor: 28.547

Review 8.  Recent advances in single-cell studies of gene regulation.

Authors:  Jangir Selimkhanov; Jeff Hasty; Lev S Tsimring
Journal:  Curr Opin Biotechnol       Date:  2011-12-06       Impact factor: 9.740

Review 9.  Genetically encoded biosensors based on engineered fluorescent proteins.

Authors:  Wolf B Frommer; Michael W Davidson; Robert E Campbell
Journal:  Chem Soc Rev       Date:  2009-08-04       Impact factor: 54.564

10.  Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips.

Authors:  Bhavna Chaudhuri; Friederike Hörmann; Sylvie Lalonde; Siobhan M Brady; David A Orlando; Philip Benfey; Wolf B Frommer
Journal:  Plant J       Date:  2008-09-18       Impact factor: 6.417

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