Literature DB >> 16187341

Critical assessment of methods of protein structure prediction (CASP)--round 6.

John Moult1, Krzysztof Fidelis, Burkhard Rost, Tim Hubbard, Anna Tramontano.   

Abstract

This article is an introduction to the special issue of the journal Proteins, dedicated to the sixth CASP experiment to assess the state of the art in protein structure prediction. The article describes the conduct of the experiment and the categories of prediction included, and outlines the evaluation and assessment procedures. A brief summary of progress over the decade of CASP experiments is also provided. 2005 Wiley-Liss, Inc.

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Year:  2005        PMID: 16187341     DOI: 10.1002/prot.20716

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  61 in total

1.  A probabilistic and continuous model of protein conformational space for template-free modeling.

Authors:  Feng Zhao; Jian Peng; Joe Debartolo; Karl F Freed; Tobin R Sosnick; Jinbo Xu
Journal:  J Comput Biol       Date:  2010-06       Impact factor: 1.479

2.  Protein loop modeling by using fragment assembly and analytical loop closure.

Authors:  Julian Lee; Dongseon Lee; Hahnbeom Park; Evangelos A Coutsias; Chaok Seok
Journal:  Proteins       Date:  2010-09-24

3.  On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins.

Authors:  Lucy R Forrest; Christopher L Tang; Barry Honig
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

4.  Fold assessment for comparative protein structure modeling.

Authors:  Francisco Melo; Andrej Sali
Journal:  Protein Sci       Date:  2007-09-28       Impact factor: 6.725

5.  Local quality assessment in homology models using statistical potentials and support vector machines.

Authors:  Marc Fasnacht; Jiang Zhu; Barry Honig
Journal:  Protein Sci       Date:  2007-06-28       Impact factor: 6.725

6.  In silico chaperonin-like cycle helps folding of proteins for structure prediction.

Authors:  Tadaomi Furuta; Yoshimi Fujitsuka; George Chikenji; Shoji Takada
Journal:  Biophys J       Date:  2008-01-04       Impact factor: 4.033

7.  Structural genomics is the largest contributor of novel structural leverage.

Authors:  Rajesh Nair; Jinfeng Liu; Ta-Tsen Soong; Thomas B Acton; John K Everett; Andrei Kouranov; Andras Fiser; Adam Godzik; Lukasz Jaroszewski; Christine Orengo; Gaetano T Montelione; Burkhard Rost
Journal:  J Struct Funct Genomics       Date:  2009-02-05

8.  A free-energy approach for all-atom protein simulation.

Authors:  Abhinav Verma; Wolfgang Wenzel
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

9.  Meta-basic estimates the size of druggable human genome.

Authors:  Dariusz Plewczynski; Leszek Rychlewski
Journal:  J Mol Model       Date:  2008-07-29       Impact factor: 1.810

10.  A Probabilistic Graphical Model for Ab Initio Folding.

Authors:  Feng Zhao; Jian Peng; Joe Debartolo; Karl F Freed; Tobin R Sosnick; Jinbo Xu
Journal:  Res Comput Mol Biol       Date:  2009
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