Literature DB >> 16180934

Data mining in pharmacovigilance: the need for a balanced perspective.

Manfred Hauben1, Vaishali Patadia, Charles Gerrits, Louisa Walsh, Lester Reich.   

Abstract

Data mining is receiving considerable attention as a tool for pharmacovigilance and is generating many perspectives on its uses. This paper presents four concepts that have appeared in various professional venues and represent potential sources of misunderstanding and/or entail extended discussions: (i) data mining algorithms are unvalidated; (ii) data mining algorithms allow data miners to objectively screen spontaneous report data; (iii) mathematically more complex Bayesian algorithms are superior to frequentist algorithms; and (iv) data mining algorithms are not just for hypothesis generation. Key points for a balanced perspective are that: (i) validation exercises have been done but lack a gold standard for comparison and are complicated by numerous nuances and pitfalls in the deployment of data mining algorithms. Their performance is likely to be highly situation dependent; (ii) the subjective nature of data mining is often underappreciated; (iii) simpler data mining models can be supplemented with 'clinical shrinkage', preserving sensitivity; and (iv) applications of data mining beyond hypothesis generation are risky, given the limitations of the data. These extended applications tend to 'creep', not pounce, into the public domain, leading to potential overconfidence in their results. Most importantly, in the enthusiasm generated by the promise of data mining tools, users must keep in mind the limitations of the data and the importance of clinical judgment and context, regardless of statistical arithmetic. In conclusion, we agree that contemporary data mining algorithms are promising additions to the pharmacovigilance toolkit, but the level of verification required should be commensurate with the nature and extent of the claimed applications.

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Year:  2005        PMID: 16180934     DOI: 10.2165/00002018-200528100-00001

Source DB:  PubMed          Journal:  Drug Saf        ISSN: 0114-5916            Impact factor:   5.606


  18 in total

1.  A retrospective evaluation of a data mining approach to aid finding new adverse drug reaction signals in the WHO international database.

Authors:  M Lindquist; M Ståhl; A Bate; I R Edwards; R H Meyboom
Journal:  Drug Saf       Date:  2000-12       Impact factor: 5.606

2.  Use of proportional reporting ratios (PRRs) for signal generation from spontaneous adverse drug reaction reports.

Authors:  S J Evans; P C Waller; S Davis
Journal:  Pharmacoepidemiol Drug Saf       Date:  2001 Oct-Nov       Impact factor: 2.890

Review 3.  Quantitative methods in pharmacovigilance: focus on signal detection.

Authors:  Manfred Hauben; Xiaofeng Zhou
Journal:  Drug Saf       Date:  2003       Impact factor: 5.606

4.  Disproportionality analysis using empirical Bayes data mining: a tool for the evaluation of drug interactions in the post-marketing setting.

Authors:  June S Almenoff; William DuMouchel; L Allen Kindman; Xionghu Yang; David Fram
Journal:  Pharmacoepidemiol Drug Saf       Date:  2003-09       Impact factor: 2.890

5.  Comparison of data mining methodologies using Japanese spontaneous reports.

Authors:  Kiyoshi Kubota; Daisuke Koide; Toshiki Hirai
Journal:  Pharmacoepidemiol Drug Saf       Date:  2004-06       Impact factor: 2.890

6.  Evaluation of suspected adverse drug reactions.

Authors:  Manfred Hauben; Eugène P van Puijenbroek
Journal:  JAMA       Date:  2005-03-16       Impact factor: 56.272

7.  A challenge to the data miners.

Authors:  David E Lilienfeld
Journal:  Pharmacoepidemiol Drug Saf       Date:  2004-12       Impact factor: 2.890

8.  A Bayesian neural network method for adverse drug reaction signal generation.

Authors:  A Bate; M Lindquist; I R Edwards; S Olsson; R Orre; A Lansner; R M De Freitas
Journal:  Eur J Clin Pharmacol       Date:  1998-06       Impact factor: 2.953

9.  Safety related drug-labelling changes: findings from two data mining algorithms.

Authors:  Manfred Hauben; Lester Reich
Journal:  Drug Saf       Date:  2004       Impact factor: 5.606

10.  Application of an empiric Bayesian data mining algorithm to reports of pancreatitis associated with atypical antipsychotics.

Authors:  Manfred Hauben
Journal:  Pharmacotherapy       Date:  2004-09       Impact factor: 4.705

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  18 in total

1.  Vaccine-based subgroup analysis in VigiBase: effect on sensitivity in paediatric signal detection.

Authors:  Sandra de Bie; Katia M C Verhamme; Sabine M J M Straus; Bruno H Ch Stricker; Miriam C J M Sturkenboom
Journal:  Drug Saf       Date:  2012-04-01       Impact factor: 5.606

2.  Temporal data mining for adverse events following immunization in nationwide Danish healthcare databases.

Authors:  Henrik Svanström; Torbjörn Callréus; Anders Hviid
Journal:  Drug Saf       Date:  2010-11-01       Impact factor: 5.606

3.  Antimicrobials and the risk of torsades de pointes: the contribution from data mining of the US FDA Adverse Event Reporting System.

Authors:  Elisabetta Poluzzi; Emanuel Raschi; Domenico Motola; Ugo Moretti; Fabrizio De Ponti
Journal:  Drug Saf       Date:  2010-04-01       Impact factor: 5.606

4.  Data mining in pharmacovigilance: lessons from phantom ships.

Authors:  Manfred Hauben; Lester Reich; Eugène P Van Puijenbroek; Charles M Gerrits; Vaishali K Patadia
Journal:  Eur J Clin Pharmacol       Date:  2006-08-03       Impact factor: 2.953

5.  What counts in data mining?

Authors:  Manfred Hauben; Vaishali K Patadia; David Goldsmith
Journal:  Drug Saf       Date:  2006       Impact factor: 5.606

6.  Illusions of objectivity and a recommendation for reporting data mining results.

Authors:  Manfred Hauben; Lester Reich; Charles M Gerrits; Muhammad Younus
Journal:  Eur J Clin Pharmacol       Date:  2007-03-16       Impact factor: 2.953

7.  'Extreme duplication' in the US FDA Adverse Events Reporting System database.

Authors:  Manfred Hauben; Lester Reich; James DeMicco; Katherine Kim
Journal:  Drug Saf       Date:  2007       Impact factor: 5.606

8.  Gold standards in pharmacovigilance: the use of definitive anecdotal reports of adverse drug reactions as pure gold and high-grade ore.

Authors:  Manfred Hauben; Jeffrey K Aronson
Journal:  Drug Saf       Date:  2007       Impact factor: 5.606

9.  Data mining in pharmacovigilance--detecting the unexpected: the role of index of suspicion of the reporter.

Authors:  Anders Sundström; Pär Hallberg
Journal:  Drug Saf       Date:  2009       Impact factor: 5.606

Review 10.  Exposure to antibacterial agents with QT liability in 14 European countries: trends over an 8-year period.

Authors:  Emanuel Raschi; Elisabetta Poluzzi; Chiara Zuliani; Arno Muller; Herman Goossens; Fabrizio De Ponti
Journal:  Br J Clin Pharmacol       Date:  2008-11-17       Impact factor: 4.335

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