Literature DB >> 11144660

A retrospective evaluation of a data mining approach to aid finding new adverse drug reaction signals in the WHO international database.

M Lindquist1, M Ståhl, A Bate, I R Edwards, R H Meyboom.   

Abstract

BACKGROUND: The detection of new drug safety signals is of growing importance with ever more new drugs becoming available and exposure to medicines increasing. The task of evaluating information relating to safety lies with national agencies and, for international data, with the World Health Organization Programme for International Drug Monitoring. RATIONALE: An established approach for identifying new drug safety signals from the international database of more than 2 million case reports depends upon clinical experts from around the world. With a very large amount of information to evaluate, such an approach is open to human error. To aid the clinical review, we have developed a new signalling process using Bayesian logic, applied to data mining, within a confidence propagation neural network (Bayesian Confidence Propagation Neural Network; BCPNN). Ultimately, this will also allow the evaluation of complex variables.
METHODS: The first part of this study tested the predictive value of the BCPNN in new signal detection as compared with reference literature sources (Martindale's Extra Pharmacopoeia in 1993 and July 2000, and the Physicians Desk Reference in July 2000). In the second part of the study, results with the BCPNN method were compared with those of the former signalling procedure.
RESULTS: In the study period (the first quarter of 1993) 107 drug-adverse reaction combinations were highlighted as new positive associations by the BCPNN, and referred to new drugs. 15 drug-adverse reaction combinations on new drugs became negative BCPNN associations in the study period. The BCPNN method detected signals with a positive predictive value of 44% and the negative predictive value was 85%. 17 as yet unconfirmed positive associations could not be dismissed with certainty as false positive signals. Of the 10 drug-adverse reaction signals produced by the former signal detection system from data sent out for review during the study period, 6 were also identified by the BCPNN. These 6 associations have all had a more than 10-fold increase of reports and 4 of them have been included in the reference sources. The remaining 4 signals that were not identified by the BCPNN had a small, or no, increase in the number of reports, and are not listed in the reference sources.
CONCLUSION: Our evaluation showed that the BCPNN approach had a high and promising predictive value in identifying early signals of new adverse drug reactions.

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Year:  2000        PMID: 11144660     DOI: 10.2165/00002018-200023060-00004

Source DB:  PubMed          Journal:  Drug Saf        ISSN: 0114-5916            Impact factor:   5.606


  6 in total

1.  The use of a medical dictionary for regulatory activities terminology (MedDRA) in prescription-event monitoring in Japan (J-PEM).

Authors:  M Yokotsuka; M Aoyama; K Kubota
Journal:  Int J Med Inform       Date:  2000-07       Impact factor: 4.046

2.  From association to alert--a revised approach to international signal analysis.

Authors:  M Lindquist; I R Edwards; A Bate; H Fucik; A M Nunes; M Ståhl
Journal:  Pharmacoepidemiol Drug Saf       Date:  1999-04       Impact factor: 2.890

Review 3.  Principles of signal detection in pharmacovigilance.

Authors:  R H Meyboom; A C Egberts; I R Edwards; Y A Hekster; F H de Koning; F W Gribnau
Journal:  Drug Saf       Date:  1997-06       Impact factor: 5.606

4.  A Bayesian neural network method for adverse drug reaction signal generation.

Authors:  A Bate; M Lindquist; I R Edwards; S Olsson; R Orre; A Lansner; R M De Freitas
Journal:  Eur J Clin Pharmacol       Date:  1998-06       Impact factor: 2.953

5.  Systemic signalling of adverse reactions to drugs.

Authors:  D J Finney
Journal:  Methods Inf Med       Date:  1974-01       Impact factor: 2.176

Review 6.  Harmonisation in pharmacovigilance.

Authors:  I R Edwards; C Biriell
Journal:  Drug Saf       Date:  1994-02       Impact factor: 5.606

  6 in total
  56 in total

Review 1.  Quantitative methods in pharmacovigilance: focus on signal detection.

Authors:  Manfred Hauben; Xiaofeng Zhou
Journal:  Drug Saf       Date:  2003       Impact factor: 5.606

2.  Use of measures of disproportionality in pharmacovigilance: three Dutch examples.

Authors:  Antoine C G Egberts; Ronald H B Meyboom; Eugène P van Puijenbroek
Journal:  Drug Saf       Date:  2002       Impact factor: 5.606

3.  A data mining approach for signal detection and analysis.

Authors:  Andrew Bate; Marie Lindquist; I Ralph Edwards; Roland Orre
Journal:  Drug Saf       Date:  2002       Impact factor: 5.606

4.  Signal selection and follow-up in pharmacovigilance.

Authors:  Ronald H B Meyboom; Marie Lindquist; Antoine C G Egberts; I Ralph Edwards
Journal:  Drug Saf       Date:  2002       Impact factor: 5.606

5.  Violation of homogeneity: a methodologic issue in the use of data mining tools.

Authors:  David Lilienfeld; Savian Nicholas; Daniel Macneil; Olga Kurjatkin; Thomas Gelardin
Journal:  Drug Saf       Date:  2003       Impact factor: 5.606

6.  Application of quantitative signal detection in the Dutch spontaneous reporting system for adverse drug reactions.

Authors:  Eugène van Puijenbroek; Willem Diemont; Kees van Grootheest
Journal:  Drug Saf       Date:  2003       Impact factor: 5.606

Review 7.  Application of data mining techniques in pharmacovigilance.

Authors:  Andrew M Wilson; Lehana Thabane; Anne Holbrook
Journal:  Br J Clin Pharmacol       Date:  2004-02       Impact factor: 4.335

8.  Assessing the impact of drug safety signals from the WHO database presented in 'SIGNAL': results from a questionnaire of National pharmacovigilance Centres.

Authors:  Malin Ståhl; I Ralph Edwards; Geoffrey Bowring; Anne Kiuru; Marie Lindquist
Journal:  Drug Saf       Date:  2003       Impact factor: 5.606

Review 9.  The periodic safety update report as a pharmacovigilance tool.

Authors:  Michael J Klepper
Journal:  Drug Saf       Date:  2004       Impact factor: 5.606

10.  A drug-adverse event extraction algorithm to support pharmacovigilance knowledge mining from PubMed citations.

Authors:  Wei Wang; Krystl Haerian; Hojjat Salmasian; Rave Harpaz; Herbert Chase; Carol Friedman
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22
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