Literature DB >> 16178209

Fast DNA translocation through a solid-state nanopore.

Arnold J Storm1, Cornelis Storm, Jianghua Chen, Henny Zandbergen, Jean-François Joanny, Cees Dekker.   

Abstract

We report experiments and modeling of translocation of double-strand DNA through a siliconoxide nanopore. Long DNA molecules with different lengths ranging from 6500 to 97000 base pairs have been electrophoretically driven through a 10 nm pore. We observe a power-law caling of the translocation time with the length, with an exponent of 1.27. This nonlinear scaling is strikingly different from the well-studied linear behavior observed in similar experiments performed on protein pores. We present a theoretical model where hydrodynamic drag on the ection of the polymer outside the pore is the dominant force counteracting the electrical driving force. We show that this applies to our experiments, and we derive a power-law scaling with an exponent of 1.22, in good agreement with the data.

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Year:  2005        PMID: 16178209     DOI: 10.1021/nl048030d

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  109 in total

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4.  DNA translocation through an array of kinked nanopores.

Authors:  Zhu Chen; Yingbing Jiang; Darren R Dunphy; David P Adams; Carter Hodges; Nanguo Liu; Nan Zhang; George Xomeritakis; Xiaozhong Jin; N R Aluru; Steven J Gaik; Hugh W Hillhouse; C Jeffrey Brinker
Journal:  Nat Mater       Date:  2010-08       Impact factor: 43.841

5.  Cooperative translocation dynamics of biopolymer chains through nanopores in a membrane: Slow dynamics limit.

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Journal:  Eur Phys J E Soft Matter       Date:  2010-10-31       Impact factor: 1.890

6.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

7.  Presentation of large DNA molecules for analysis as nanoconfined dumbbells.

Authors:  Kristy L Kounovsky-Shafer; Juan P Hernández-Ortiz; Kyubong Jo; Theo Odijk; Juan J de Pablo; David C Schwartz
Journal:  Macromolecules       Date:  2013-10-22       Impact factor: 5.985

8.  Nanopore detection of copper ions using a polyhistidine probe.

Authors:  Guihua Wang; Liang Wang; Yujing Han; Shuo Zhou; Xiyun Guan
Journal:  Biosens Bioelectron       Date:  2013-10-23       Impact factor: 10.618

9.  Enzyme-modulated DNA translocation through a nanopore.

Authors:  Ajay S Panwar; M Muthukumar
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

10.  Nanopore based sequence specific detection of duplex DNA for genomic profiling.

Authors:  Alon Singer; Meni Wanunu; Will Morrison; Heiko Kuhn; Maxim Frank-Kamenetskii; Amit Meller
Journal:  Nano Lett       Date:  2010-02-10       Impact factor: 11.189

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