Literature DB >> 23100711

A biological treasure metagenome: pave a way for big science.

So-Youn Park1, Geun-Joong Kim.   

Abstract

The trend of recent researches, in which synthetic biology and white technology through system approaches based on "Omics technology" are recognized as the ground of biotechnology, indicates the coming of the 'metagenome era' that accesses the genomes of all microbes aiming at the understanding and industrial application of the whole microbial resources. The remarkable advance of technologies for digging out and analyzing metagenome is enabling not only practical applications of metagenome but also system approaches on a mixed-genome level based on accumulated information. In this situation, the present review is purposed to introduce the trends and methods of research on metagenome and to examine big science led by related resources in the future.

Entities:  

Keywords:  Biological treasure; Gene mining; Metagenome; Novel metabolites; Systems approach

Year:  2008        PMID: 23100711      PMCID: PMC3450180          DOI: 10.1007/s12088-008-0030-5

Source DB:  PubMed          Journal:  Indian J Microbiol        ISSN: 0046-8991            Impact factor:   2.461


  63 in total

Review 1.  Genome-scale microbial in silico models: the constraints-based approach.

Authors:  Nathan D Price; Jason A Papin; Christophe H Schilling; Bernhard O Palsson
Journal:  Trends Biotechnol       Date:  2003-04       Impact factor: 19.536

2.  Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products.

Authors:  Sophie Courtois; Carmela M Cappellano; Maria Ball; Francois-Xavier Francou; Philippe Normand; Gérard Helynck; Asuncion Martinez; Steven J Kolvek; Joern Hopke; Marcia S Osburne; Paul R August; Renaud Nalin; Michel Guérineau; Pascale Jeannin; Pascal Simonet; Jean-Luc Pernodet
Journal:  Appl Environ Microbiol       Date:  2003-01       Impact factor: 4.792

3.  Activity-based high-throughput screening of enzymes by using a DNA microarray.

Authors:  Yi Hu; Grace Y J Chen; Shao Q Yao
Journal:  Angew Chem Int Ed Engl       Date:  2005-02-04       Impact factor: 15.336

Review 4.  Metagenomics-based drug discovery and marine microbial diversity.

Authors:  Xiang Li; Ling Qin
Journal:  Trends Biotechnol       Date:  2005-09-12       Impact factor: 19.536

5.  Bioinformatic insights from metagenomics through visualization.

Authors:  Susan L Havre; Bobbie-Jo Webb-Robertson; Anuj Shah; Christian Posse; Banu Gopalan; Fred J Brockman
Journal:  Proc IEEE Comput Syst Bioinform Conf       Date:  2005

Review 6.  Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances.

Authors:  Jianping Xu
Journal:  Mol Ecol       Date:  2006-06       Impact factor: 6.185

Review 7.  Predicting protein function from sequence and structure.

Authors:  David Lee; Oliver Redfern; Christine Orengo
Journal:  Nat Rev Mol Cell Biol       Date:  2007-12       Impact factor: 94.444

8.  Sequence-based screening for self-sufficient P450 monooxygenase from a metagenome library.

Authors:  B S Kim; S Y Kim; J Park; W Park; K Y Hwang; Y J Yoon; W K Oh; B Y Kim; J S Ahn
Journal:  J Appl Microbiol       Date:  2007-05       Impact factor: 3.772

9.  Natural products from isnA-containing biosynthetic gene clusters recovered from the genomes of cultured and uncultured bacteria.

Authors:  Sean F Brady; John D Bauer; Michael F Clarke-Pearson; Rachel Daniels
Journal:  J Am Chem Soc       Date:  2007-09-19       Impact factor: 15.419

Review 10.  Predicting antibiotic resistance.

Authors:  José L Martínez; Fernando Baquero; Dan I Andersson
Journal:  Nat Rev Microbiol       Date:  2007-12       Impact factor: 60.633

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  1 in total

Review 1.  Oral Microbiome: Getting to Know and Befriend Neighbors, a Biological Approach.

Authors:  Cecilia Bacali; Romana Vulturar; Smaranda Buduru; Angela Cozma; Adriana Fodor; Adina Chiș; Ondine Lucaciu; Laura Damian; Mirela Liliana Moldovan
Journal:  Biomedicines       Date:  2022-03-14
  1 in total

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