Literature DB >> 16151375

Synergy between sequence and size in large-scale genomics.

T Ryan Gregory1.   

Abstract

Until recently the study of individual DNA sequences and of total DNA content (the C-value) sat at opposite ends of the spectrum in genome biology. For gene sequencers, the vast stretches of non-coding DNA found in eukaryotic genomes were largely considered to be an annoyance, whereas genome-size researchers attributed little relevance to specific nucleotide sequences. However, the dawn of comprehensive genome sequencing has allowed a new synergy between these fields, with sequence data providing novel insights into genome-size evolution, and with genome-size data being of both practical and theoretical significance for large-scale sequence analysis. In combination, these formerly disconnected disciplines are poised to deliver a greatly improved understanding of genome structure and evolution.

Mesh:

Year:  2005        PMID: 16151375     DOI: 10.1038/nrg1674

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  112 in total

Review 1.  A guided tour of large genome size in animals: what we know and where we are heading.

Authors:  France Dufresne; Nicholas Jeffery
Journal:  Chromosome Res       Date:  2011-10       Impact factor: 5.239

2.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

Authors:  Irma Lozada-Chávez; Peter F Stadler; Sonja J Prohaska
Journal:  Orig Life Evol Biosph       Date:  2012-02-10       Impact factor: 1.950

Review 3.  Natural killer cells and their receptors in multiple sclerosis.

Authors:  Gurman Kaur; John Trowsdale; Lars Fugger
Journal:  Brain       Date:  2012-06-25       Impact factor: 13.501

Review 4.  Annotating non-coding regions of the genome.

Authors:  Roger P Alexander; Gang Fang; Joel Rozowsky; Michael Snyder; Mark B Gerstein
Journal:  Nat Rev Genet       Date:  2010-07-13       Impact factor: 53.242

5.  What's in a genome? The C-value enigma and the evolution of eukaryotic genome content.

Authors:  Tyler A Elliott; T Ryan Gregory
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

6.  Nuclear DNA content of Pongamia pinnata L. and genome size stability of in vitro-regenerated plantlets.

Authors:  Rimjhim Roy Choudhury; Supriyo Basak; Aadi Moolam Ramesh; Latha Rangan
Journal:  Protoplasma       Date:  2013-08-29       Impact factor: 3.356

7.  New twists on long noncoding RNAs: from mobile elements to motile cancer cells.

Authors:  Tuan M Nguyen; Sumayya Alchalabi; Adewunmi Oluwatoyosi; Ali S Ropri; Jason I Herschkowitz; Jeffrey M Rosen
Journal:  RNA Biol       Date:  2020-06-10       Impact factor: 4.652

8.  Maternal inheritance, epigenetics and the evolution of polyandry.

Authors:  Jeanne A Zeh; David W Zeh
Journal:  Genetica       Date:  2007-08-20       Impact factor: 1.082

9.  Genome size and GC content evolution of Festuca: ancestral expansion and subsequent reduction.

Authors:  Petr Smarda; Petr Bures; Lucie Horová; Bruno Foggi; Graziano Rossi
Journal:  Ann Bot       Date:  2007-12-24       Impact factor: 4.357

Review 10.  DNA transposons and the evolution of eukaryotic genomes.

Authors:  Cédric Feschotte; Ellen J Pritham
Journal:  Annu Rev Genet       Date:  2007       Impact factor: 16.830

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