Literature DB >> 16145147

Coding and noncoding genomic regions of Entamoeba histolytica have significantly different rates of sequence polymorphisms: implications for epidemiological studies.

Dhruva Bhattacharya1, Rashidul Haque, Upinder Singh.   

Abstract

To evaluate genetic variability among Entamoeba histolytica strains, we sequenced 9,077 bp from each of 14 isolates. The polymorphism rates from coding and noncoding regions were significantly different (0.07% and 0.37%, respectively), indicating that these regions are subject to different selection pressures. Additionally, single nucleotide polymorphisms (SNPs) potentially associated with specific clinical outcomes were identified.

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Year:  2005        PMID： 16145147      PMCID： PMC1234137          DOI： 10.1128/JCM.43.9.4815-4819.2005

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  22 in total

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Authors:  K Tanabe; N Sakihama; A Kaneko
Journal:  Science       Date:  2004-01-23       Impact factor: 47.728

2.  Entamoeba histolytica: direct PCR-based typing of strains using faecal DNA.

Authors:  Mehreen Zaki; Jaco J Verweij; C Graham Clark
Journal:  Exp Parasitol       Date:  2003 May-Jun       Impact factor: 2.011

3.  Remarkable genetic polymorphism among Entamoeba histolytica isolates from a limited geographic area.

Authors:  Ali Haghighi; Seiki Kobayashi; Tsutomu Takeuchi; Gohta Masuda; Tomoyoshi Nozaki
Journal:  J Clin Microbiol       Date:  2002-11       Impact factor: 5.948

4.  Isolation and characterization of polymorphic DNA from Entamoeba histolytica.

Authors:  M Zaki; C G Clark
Journal:  J Clin Microbiol       Date:  2001-03       Impact factor: 5.948

5.  Entamoeba histolytica: genetic diversity of clinical isolates from Bangladesh as demonstrated by polymorphisms in the serine-rich gene.

Authors:  P F Ayeh-Kumi; I M Ali; L A Lockhart; C A Gilchrist; W A Petri; R Haque
Journal:  Exp Parasitol       Date:  2001-10       Impact factor: 2.011

6.  Entamoeba histolytica: sequence conservation of the Gal/GalNAc lectin from clinical isolates.

Authors:  David L Beck; Mehmet Tanyuksel; Aaron J Mackey; Rashidul Haque; Nino Trapaidze; William R Pearson; Brendan Loftus; William A Petri
Journal:  Exp Parasitol       Date:  2002 Jun-Jul       Impact factor: 2.011

7.  Introns of Entamoeba histolytica and Entamoeba dispar.

Authors:  U Wilihoeft; E Campos-Góngora; S Touzni; I Bruchhaus; E Tannich
Journal:  Protist       Date:  2001-07

8.  Comparative genomic hybridizations of Entamoeba strains reveal unique genetic fingerprints that correlate with virulence.

Authors:  Preetam H Shah; Ryan C MacFarlane; Dhruva Bhattacharya; John C Matese; Janos Demeter; Suzanne E Stroup; Upinder Singh
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9.  Genotyping of Entamoeba species in South Africa: diversity, stability, and transmission patterns within families.

Authors:  Mehreen Zaki; Selvan G Reddy; Terry F H G Jackson; Jonathan I Ravdin; C Graham Clark
Journal:  J Infect Dis       Date:  2003-06-04       Impact factor: 5.226

10.  Geographic diversity among genotypes of Entamoeba histolytica field isolates.

Authors:  Ali Haghighi; Seiki Kobayashi; Tsutomu Takeuchi; Nitaya Thammapalerd; Tomoyoshi Nozaki
Journal:  J Clin Microbiol       Date:  2003-08       Impact factor: 5.948
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  14 in total

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Authors:  Carol A Gilchrist
Journal:  Curr Trop Med Rep       Date:  2016-10-03

Review 2.  Molecular methods for diagnosis of Entamoeba histolytica in a clinical setting: an overview.

Authors:  Jaishree Paul; Shweta Srivastava; Sudha Bhattacharya
Journal:  Exp Parasitol       Date:  2006-12-26       Impact factor: 2.011

3.  Comparison of serine-rich protein genes of Entamoeba histolytica isolates obtained from institutions for the mentally retarded in Kanagawa and Shizuoka Prefectures, Japan.

Authors:  Yong-Feng Fu; Kouichi Nagakura; Xun-Jia Cheng; Hiroshi Tachibana
Journal:  Parasitol Res       Date:  2010-06-17       Impact factor: 2.289

Review 4.  Long non-coding RNAs as possible therapeutic targets in protozoa, and in Schistosoma and other helminths.

Authors:  Gilbert O Silveira; Helena S Coelho; Murilo S Amaral; Sergio Verjovski-Almeida
Journal:  Parasitol Res       Date:  2021-12-03       Impact factor: 2.289

5.  Molecular epidemiology of amebiasis.

Authors:  Ibne Karim M Ali; C Graham Clark; William A Petri
Journal:  Infect Genet Evol       Date:  2008-05-14       Impact factor: 3.342

6.  DNA characterization of simian Entamoeba histolytica-like strains to differentiate them from Entamoeba histolytica.

Authors:  Jun-ichiro Takano; Hiroshi Tachibana; Miyoko Kato; Toyoko Narita; Tetsuo Yanagi; Yasuhiro Yasutomi; Koji Fujimoto
Journal:  Parasitol Res       Date:  2009-05-27       Impact factor: 2.289

7.  Unusually low levels of genetic variation among Giardia lamblia isolates.

Authors:  Smilja Teodorovic; John M Braverman; Heidi G Elmendorf
Journal:  Eukaryot Cell       Date:  2007-06-08

8.  Identification of differentially expressed genes in virulent and nonvirulent Entamoeba species: potential implications for amebic pathogenesis.

Authors:  Ryan C MacFarlane; Upinder Singh
Journal:  Infect Immun       Date:  2006-01       Impact factor: 3.441

9.  Genomic diversity of the human intestinal parasite Entamoeba histolytica.

Authors:  Gareth D Weedall; C Graham Clark; Pia Koldkjaer; Suzanne Kay; Iris Bruchhaus; Egbert Tannich; Steve Paterson; Neil Hall
Journal:  Genome Biol       Date:  2012-05-25       Impact factor: 13.583

10.  A Multilocus Sequence Typing System (MLST) reveals a high level of diversity and a genetic component to Entamoeba histolytica virulence.

Authors:  Carol A Gilchrist; Ibne Karim M Ali; Mamun Kabir; Faisal Alam; Sana Scherbakova; Eric Ferlanti; Gareth D Weedall; Neil Hall; Rashidul Haque; William A Petri; Elisabet Caler
Journal:  BMC Microbiol       Date:  2012-07-27       Impact factor: 3.605
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