Literature DB >> 16143850

NMR analysis of plant nitrogen metabolism.

F Mesnard1, R G Ratcliffe.   

Abstract

The analysis of primary and secondary nitrogen metabolism in plants by nuclear magnetic resonance (NMR) spectroscopy is comprehensively reviewed. NMR is a versatile analytical tool, and the combined use of (1)H, (2)H, (13)C, (14)N and (15)N NMR allows detailed investigation of the acquisition, assimilation and metabolism of nitrogen. The analysis of tissue extracts can be complemented by the in vivo NMR analysis of functioning tissues and cell suspensions, and by the application of solid state NMR techniques. Moreover stable isotope labelling with (2)H-, (13)C- and (15)N-labelled precursors provides direct insight into specific pathways, with the option of both time-course and steady state analysis increasing the potential value of the approach. The scope of the NMR method, and its contribution to studies of plant nitrogen metabolism, are illustrated with a wide range of examples. These include studies of the GS/GOGAT pathway of ammonium assimilation, investigations of the metabolism of glutamate, glycine and other amino acids, and applications to tropane alkaloid metabolism. The continuing development of the NMR technique, together with potential applications in the emerging fields of metabolomics and metabolic flux analysis, leads to the conclusion that NMR will play an increasingly valuable role in the analysis of plant nitrogen metabolism.

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Year:  2005        PMID: 16143850     DOI: 10.1007/s11120-004-2081-8

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  72 in total

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Journal:  Plant Physiol       Date:  2003-06       Impact factor: 8.340

2.  Characterization of Acetate and Pyruvate Metabolism in Suspension Cultures of Zea mays by C NMR Spectroscopy.

Authors:  D J Ashworth; R Y Lee; D O Adams
Journal:  Plant Physiol       Date:  1987-10       Impact factor: 8.340

3.  Use of 15N reverse gradient two-dimensional nuclear magnetic resonance spectroscopy to follow metabolic activity in Nicotiana plumbaginifolia cell-suspension cultures.

Authors:  F Mesnard; N Azaroual; D Marty; M A Fliniaux; R J Robins; G Vermeersch; J P Monti
Journal:  Planta       Date:  2000-02       Impact factor: 4.116

4.  In vivo fluxes in the ammonium-assimilatory pathways in corynebacterium glutamicum studied by 15N nuclear magnetic resonance

Authors: 
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5.  NMR profiling of transgenic peas.

Authors:  Adrian Charlton; Theo Allnutt; Stephen Holmes; James Chisholm; Samantha Bean; Noel Ellis; Phil Mullineaux; Sarah Oehlschlager
Journal:  Plant Biotechnol J       Date:  2004-01       Impact factor: 9.803

6.  Urea: a nitrogen source for the aquatic resurrection plant Chamaegigas intrepidus Dinter.

Authors:  H Heilmeier; R G Ratcliffe; W Hartung
Journal:  Oecologia       Date:  2000-04       Impact factor: 3.225

7.  Correlation-peak imaging.

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8.  Nitrogen metabolism in Lignifying Pinus taeda cell cultures.

Authors:  P S van Heerden; G H Towers; N G Lewis
Journal:  J Biol Chem       Date:  1996-05-24       Impact factor: 5.157

9.  Estimation of protein turnover in soybean leaves using magic angle double cross-polarization nitrogen 15 nuclear magnetic resonance.

Authors:  J Schaefer; T A Skokut; E O Stejskal; R A McKay; J E Varner
Journal:  J Biol Chem       Date:  1981-11-25       Impact factor: 5.157

10.  Metabolite profiling of tomato (Lycopersicon esculentum) using 1H NMR spectroscopy as a tool to detect potential unintended effects following a genetic modification.

Authors:  Gwénaëlle Le Gall; Ian J Colquhoun; Adrienne L Davis; Geoff J Collins; Martine E Verhoeyen
Journal:  J Agric Food Chem       Date:  2003-04-23       Impact factor: 5.279

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  12 in total

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Authors:  Elizabeth Kimball; Joshua D Rabinowitz
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2.  Infection risk by dermatophytes during storage and after domestic laundry and their temperature-dependent inactivation.

Authors:  Timo R Hammer; Helmut Mucha; Dirk Hoefer
Journal:  Mycopathologia       Date:  2010-07-23       Impact factor: 2.574

3.  Characterization of Early Enzymes Involved in TDP-Aminodideoxypentose Biosynthesis en Route to Indolocarbazole AT2433.

Authors:  Pauline Peltier-Pain; Shanteri Singh; Jon S Thorson
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4.  iMS2Flux--a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis.

Authors:  C Hart Poskar; Jan Huege; Christian Krach; Mathias Franke; Yair Shachar-Hill; Björn H Junker
Journal:  BMC Bioinformatics       Date:  2012-11-12       Impact factor: 3.169

5.  Recent advances of metabolomics in plant biotechnology.

Authors:  Yozo Okazaki; Kazuki Saito
Journal:  Plant Biotechnol Rep       Date:  2011-07-29       Impact factor: 2.010

6.  Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites.

Authors:  Wolfgang R Engelsberger; Alexander Erban; Joachim Kopka; Waltraud X Schulze
Journal:  Plant Methods       Date:  2006-09-04       Impact factor: 4.993

7.  Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction.

Authors:  A Ranjitha Dhanasekaran; Jon L Pearson; Balasubramanian Ganesan; Bart C Weimer
Journal:  BMC Bioinformatics       Date:  2015-02-25       Impact factor: 3.169

Review 8.  Understanding Plant Nitrogen Metabolism through Metabolomics and Computational Approaches.

Authors:  Perrin H Beatty; Matthias S Klein; Jeffrey J Fischer; Ian A Lewis; Douglas G Muench; Allen G Good
Journal:  Plants (Basel)       Date:  2016-10-10

9.  Resolving the role of plant glutamate dehydrogenase. I. In vivo real time nuclear magnetic resonance spectroscopy experiments.

Authors:  Soraya Labboun; Thérèse Tercé-Laforgue; Albrecht Roscher; Magali Bedu; Francesco M Restivo; Christos N Velanis; Damianos S Skopelitis; Panagiotis N Moschou; Panagiotis N Moshou; Kalliopi A Roubelakis-Angelakis; Akira Suzuki; Bertrand Hirel
Journal:  Plant Cell Physiol       Date:  2009-08-18       Impact factor: 4.927

10.  A general NMR-based strategy for the in situ characterization of sugar-nucleotide-dependent biosynthetic pathways.

Authors:  Shanteri Singh; Pauline Peltier-Pain; Marco Tonelli; Jon S Thorson
Journal:  Org Lett       Date:  2014-06-09       Impact factor: 6.005

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