Literature DB >> 16141078

An mRNA is capped by a 2', 5' lariat catalyzed by a group I-like ribozyme.

Henrik Nielsen1, Eric Westhof, Steinar Johansen.   

Abstract

Twin-ribozyme introns are formed by two ribozymes belonging to the group I family and occur in some ribosomal RNA transcripts. The group I-like ribozyme, GIR1, liberates the 5' end of a homing endonuclease messenger RNA in the slime mold Didymium iridis. We demonstrate that this cleavage occurs by a transesterification reaction with the joining of the first and the third nucleotide of the messenger by a 2',5'-phosphodiester linkage. Thus, a group I-like ribozyme catalyzes an RNA branching reaction similar to the first step of splicing in group II introns and spliceosomal introns. The resulting short lariat, by forming a protective 5' cap, might have been useful in a primitive RNA world.

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Year:  2005        PMID: 16141078     DOI: 10.1126/science.1113645

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  28 in total

Review 1.  The tertiary structure of group II introns: implications for biological function and evolution.

Authors:  Anna Marie Pyle
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-06       Impact factor: 8.250

2.  Spliceosome discards intermediates via the DEAH box ATPase Prp43p.

Authors:  Rabiah M Mayas; Hiroshi Maita; Daniel R Semlow; Jonathan P Staley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-12       Impact factor: 11.205

Review 3.  Convergent evolution of twintron-like configurations: One is never enough.

Authors:  Mohamed Hafez; Georg Hausner
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone.

Authors:  Xueyi Wang; Gary Kapral; Laura Murray; David Richardson; Jane Richardson; Jack Snoeyink
Journal:  J Math Biol       Date:  2007-03-31       Impact factor: 2.259

5.  A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA.

Authors:  Henrik Nielsen; Christer Einvik; Thomas E Lentz; Mads Marquardt Hedegaard; Steinar D Johansen
Journal:  RNA       Date:  2009-03-27       Impact factor: 4.942

Review 6.  Ribozymes, riboswitches and beyond: regulation of gene expression without proteins.

Authors:  Alexander Serganov; Dinshaw J Patel
Journal:  Nat Rev Genet       Date:  2007-09-11       Impact factor: 53.242

7.  Speciation of a group I intron into a lariat capping ribozyme.

Authors:  Mélanie Meyer; Henrik Nielsen; Vincent Oliéric; Pierre Roblin; Steinar D Johansen; Eric Westhof; Benoît Masquida
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

8.  Recurrent insertion of 5'-terminal nucleotides and loss of the branchpoint motif in lineages of group II introns inserted in mitochondrial preribosomal RNAs.

Authors:  Cheng-Fang Li; Maria Costa; Gurminder Bassi; Yiu-Kay Lai; François Michel
Journal:  RNA       Date:  2011-05-25       Impact factor: 4.942

9.  Eukaryotic operon-like transcription of functionally related genes in Drosophila.

Authors:  Yehuda Ben-Shahar; Kishore Nannapaneni; Thomas L Casavant; Todd E Scheetz; Michael J Welsh
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

10.  Adenosine is inherently favored as the branch-site RNA nucleotide in a structural context that resembles natural RNA splicing.

Authors:  Elena Zelin; Yangming Wang; Scott K Silverman
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

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