Literature DB >> 17846637

Ribozymes, riboswitches and beyond: regulation of gene expression without proteins.

Alexander Serganov1, Dinshaw J Patel.   

Abstract

Although various functions of RNA are carried out in conjunction with proteins, some catalytic RNAs, or ribozymes, which contribute to a range of cellular processes, require little or no assistance from proteins. Furthermore, the discovery of metabolite-sensing riboswitches and other types of RNA sensors has revealed RNA-based mechanisms that cells use to regulate gene expression in response to internal and external changes. Structural studies have shown how these RNAs can carry out a range of functions. In addition, the contribution of ribozymes and riboswitches to gene expression is being revealed as far more widespread than was previously appreciated. These findings have implications for understanding how cellular functions might have evolved from RNA-based origins.

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Year:  2007        PMID: 17846637      PMCID: PMC4689321          DOI: 10.1038/nrg2172

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  121 in total

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2.  An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes.

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Authors:  Feng Guo; Anne R Gooding; Thomas R Cech
Journal:  Mol Cell       Date:  2004-11-05       Impact factor: 17.970

4.  A database search for hammerhead ribozyme motifs.

Authors:  S Gräf; R Przybilski; G Steger; C Hammann
Journal:  Biochem Soc Trans       Date:  2005-06       Impact factor: 5.407

5.  A folding control element for tertiary collapse of a group II intron ribozyme.

Authors:  Christina Waldsich; Anna Marie Pyle
Journal:  Nat Struct Mol Biol       Date:  2006-12-03       Impact factor: 15.369

6.  Molecular basis for temperature sensing by an RNA thermometer.

Authors:  Saheli Chowdhury; Christophe Maris; Frédéric H-T Allain; Franz Narberhaus
Journal:  EMBO J       Date:  2006-05-18       Impact factor: 11.598

7.  Identification of the universally conserved core of ribonuclease P RNA.

Authors:  J L Chen; N R Pace
Journal:  RNA       Date:  1997-06       Impact factor: 4.942

8.  The riboswitch-mediated control of sulfur metabolism in bacteria.

Authors:  Vitaly Epshtein; Alexander S Mironov; Evgeny Nudler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-17       Impact factor: 11.205

9.  The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase.

Authors:  Ryan T Fuchs; Frank J Grundy; Tina M Henkin
Journal:  Nat Struct Mol Biol       Date:  2006-02-19       Impact factor: 15.369

10.  Observation of internal cleavage and ligation reactions of a ribozyme.

Authors:  Michelle K Nahas; Timothy J Wilson; Sungchul Hohng; Kaera Jarvie; David M J Lilley; Taekjip Ha
Journal:  Nat Struct Mol Biol       Date:  2004-10-10       Impact factor: 15.369

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  139 in total

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4.  Inducible gene expression from the plastid genome by a synthetic riboswitch.

Authors:  Andreas Verhounig; Daniel Karcher; Ralph Bock
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

5.  Folding of a transcriptionally acting preQ1 riboswitch.

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

6.  Entropic origin of Mg2+-facilitated RNA folding.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-01       Impact factor: 11.205

7.  Differential analogue binding by two classes of c-di-GMP riboswitches.

Authors:  Carly A Shanahan; Barbara L Gaffney; Roger A Jones; Scott A Strobel
Journal:  J Am Chem Soc       Date:  2011-09-08       Impact factor: 15.419

Review 8.  Analysis of In Vitro Aptamer Selection Parameters.

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Journal:  J Mol Evol       Date:  2015-11-03       Impact factor: 2.395

Review 9.  Towards deciphering the principles underlying an mRNA recognition code.

Authors:  Alexander Serganov; Dinshaw J Patel
Journal:  Curr Opin Struct Biol       Date:  2008-02-05       Impact factor: 6.809

10.  Leakage and slow allostery limit performance of single drug-sensing aptazyme molecules based on the hammerhead ribozyme.

Authors:  Chamaree de Silva; Nils G Walter
Journal:  RNA       Date:  2008-11-24       Impact factor: 4.942

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