Literature DB >> 16122968

NMR analysis of protein interactions.

Alexandre M J J Bonvin1, Rolf Boelens, Robert Kaptein.   

Abstract

Recent technological advances in NMR spectroscopy have alleviated the size limitations for the determination of biomolecular structures in solution. At the same time, novel NMR parameters such as residual dipolar couplings are providing greater accuracy. As this review shows, the structures of protein-protein and protein-nucleic acid complexes up to 50 kDa can now be accurately determined. Although de novo structure determination still requires considerable effort, information on interaction surfaces from chemical shift perturbations is much easier to obtain. Advances in modelling and data-driven docking procedures allow this information to be used for determining approximate structures of biomolecular complexes. As a result, a wealth of information has become available on the way in which proteins interact with other biomolecules. Of particular interest is the fact that these NMR-based methods can be applied to weak and transient protein-protein complexes that are difficult to study by other structural methods.

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Year:  2005        PMID: 16122968     DOI: 10.1016/j.cbpa.2005.08.011

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  29 in total

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4.  Modeling protein assemblies in the proteome.

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Journal:  Mol Cell Proteomics       Date:  2014-01-20       Impact factor: 5.911

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Journal:  J Struct Funct Genomics       Date:  2007-09-01

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7.  Functional dynamics of the folded ankyrin repeats of I kappa B alpha revealed by nuclear magnetic resonance.

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8.  E9-Im9 colicin DNase-immunity protein biomolecular association in water: a multiple-copy and accelerated molecular dynamics simulation study.

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9.  Interaction between the transactivation domain of p53 and PC4 exemplifies acidic activation domains as single-stranded DNA mimics.

Authors:  Sridharan Rajagopalan; Antonina Andreeva; Daniel P Teufel; Stefan M Freund; Alan R Fersht
Journal:  J Biol Chem       Date:  2009-06-12       Impact factor: 5.157

10.  NMR characterisation of the minimal interacting regions of centrosomal proteins 4.1R and NuMA1: effect of phosphorylation.

Authors:  Miguel A Treviño; Mar Rodríguez-Rodríguez; Isabel Correas; Miguel Marcilla; Juan P Albar; Manuel Rico; M Angeles Jiménez; Marta Bruix
Journal:  BMC Biochem       Date:  2010-01-28       Impact factor: 4.059

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