Literature DB >> 16107250

Structural domains in RNAi.

Robert E Collins1, Xiaodong Cheng.   

Abstract

Structural and biochemical studies have begun to elucidate the pathway of RNA silencing that leads to the formation of the RISC complex. The outstanding feature of this pathway is the precise recognition and processing of double-stranded RNA. We present a review of recent structures that illustrate the molecular mechanisms contributing to these two related functions, highlighting models of Drosha, Dicer, and RISC function.

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Year:  2005        PMID: 16107250      PMCID: PMC2702771          DOI: 10.1016/j.febslet.2005.07.072

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  51 in total

1.  A species of small antisense RNA in posttranscriptional gene silencing in plants.

Authors:  A J Hamilton; D C Baulcombe
Journal:  Science       Date:  1999-10-29       Impact factor: 47.728

Review 2.  RNA silencing and genome regulation.

Authors:  Ricardo Almeida; Robin C Allshire
Journal:  Trends Cell Biol       Date:  2005-05       Impact factor: 20.808

3.  Purified Argonaute2 and an siRNA form recombinant human RISC.

Authors:  Fabiola V Rivas; Niraj H Tolia; Ji-Joon Song; Juan P Aragon; Jidong Liu; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Nat Struct Mol Biol       Date:  2005-03-30       Impact factor: 15.369

4.  The contributions of dsRNA structure to Dicer specificity and efficiency.

Authors:  Annaleen Vermeulen; Linda Behlen; Angela Reynolds; Alexey Wolfson; William S Marshall; Jon Karpilow; Anastasia Khvorova
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

5.  Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage.

Authors:  J Blaszczyk; J E Tropea; M Bubunenko; K M Routzahn; D S Waugh; D L Court; X Ji
Journal:  Structure       Date:  2001-12       Impact factor: 5.006

6.  Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.

Authors:  Jin-Biao Ma; Yu-Ren Yuan; Gunter Meister; Yi Pei; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

7.  Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex.

Authors:  James S Parker; S Mark Roe; David Barford
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

8.  A cellular microRNA mediates antiviral defense in human cells.

Authors:  Charles-Henri Lecellier; Patrice Dunoyer; Khalil Arar; Jacqueline Lehmann-Che; Stephanie Eyquem; Christophe Himber; Ali Saïb; Olivier Voinnet
Journal:  Science       Date:  2005-04-22       Impact factor: 47.728

9.  Efficient processing of primary microRNA hairpins by Drosha requires flanking nonstructured RNA sequences.

Authors:  Yan Zeng; Bryan R Cullen
Journal:  J Biol Chem       Date:  2005-06-01       Impact factor: 5.157

10.  A virus-encoded inhibitor that blocks RNA interference in mammalian cells.

Authors:  Christopher S Sullivan; Don Ganem
Journal:  J Virol       Date:  2005-06       Impact factor: 5.103

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  19 in total

Review 1.  Antiviral silencing in animals.

Authors:  Hong-Wei Li; Shou-Wei Ding
Journal:  FEBS Lett       Date:  2005-08-31       Impact factor: 4.124

Review 2.  Structural and biochemical advances in mammalian RNAi.

Authors:  Robert E Collins; Xiaodong Cheng
Journal:  J Cell Biochem       Date:  2006-12-01       Impact factor: 4.429

Review 3.  RNA-binding proteins: modular design for efficient function.

Authors:  Bradley M Lunde; Claire Moore; Gabriele Varani
Journal:  Nat Rev Mol Cell Biol       Date:  2007-06       Impact factor: 94.444

4.  A key gene of the small RNA pathway in the flounder, Paralichthys olivaceus: identification and functional characterization of dicer.

Authors:  Yuanshuai Fu; Junling Zhang; Zhiyi Shi; Guyue Wang; Wejuan Li; Liang Jia
Journal:  Fish Physiol Biochem       Date:  2015-06-05       Impact factor: 2.794

5.  Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing.

Authors:  Seong Wook Yang; Hong-Ying Chen; Jing Yang; Satoru Machida; Nam-Hai Chua; Y Adam Yuan
Journal:  Structure       Date:  2010-05-12       Impact factor: 5.006

Review 6.  Structural biology of RNA silencing and its functional implications.

Authors:  D J Patel; J-B Ma; Y-R Yuan; K Ye; Y Pei; V Kuryavyi; L Malinina; G Meister; T Tuschl
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2006

7.  Introduction--Epiphanies in epigenetics.

Authors:  Xiaodong Cheng; Robert M Blumenthal
Journal:  Prog Mol Biol Transl Sci       Date:  2011       Impact factor: 3.622

8.  Protease activity, self interaction, and small interfering RNA binding of the silencing suppressor p1b from cucumber vein yellowing ipomovirus.

Authors:  Adrian Valli; Gabriela Dujovny; Juan Antonio García
Journal:  J Virol       Date:  2007-11-07       Impact factor: 5.103

9.  aubergine gene overexpression in somatic tissues of aubergine(sting) mutants interferes with the RNAi pathway of a yellow hairpin dsRNA in Drosophila melanogaster.

Authors:  Valeria Specchia; Clara Benna; Gabriella Margherita Mazzotta; Alberto Piccin; Mauro A Zordan; Rodolfo Costa; Maria Pia Bozzetti
Journal:  Genetics       Date:  2008-03       Impact factor: 4.562

10.  Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems.

Authors:  Poornima Parameswaran; Ella Sklan; Courtney Wilkins; Trever Burgon; Melanie A Samuel; Rui Lu; K Mark Ansel; Vigo Heissmeyer; Shirit Einav; William Jackson; Tammy Doukas; Suman Paranjape; Charlotta Polacek; Flavia Barreto dos Santos; Roxana Jalili; Farbod Babrzadeh; Baback Gharizadeh; Dirk Grimm; Mark Kay; Satoshi Koike; Peter Sarnow; Mostafa Ronaghi; Shou-Wei Ding; Eva Harris; Marie Chow; Michael S Diamond; Karla Kirkegaard; Jeffrey S Glenn; Andrew Z Fire
Journal:  PLoS Pathog       Date:  2010-02-12       Impact factor: 6.823

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