Literature DB >> 17381284

Structural biology of RNA silencing and its functional implications.

D J Patel1, J-B Ma, Y-R Yuan, K Ye, Y Pei, V Kuryavyi, L Malinina, G Meister, T Tuschl.   

Abstract

We outline structure-function contributions from our laboratories on protein-RNA recognition events that monitor siRNA length, 5 -phosphate and 2-nucleotide 3 overhangs, as well as the architecture of Argonaute, its externally bound siRNA complex, and Argonaute-based models involving guide-strand-mediated mRNA binding, cleavage, and release.

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Year:  2006        PMID: 17381284      PMCID: PMC4689314          DOI: 10.1101/sqb.2006.71.053

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN: 0091-7451


  89 in total

1.  Functional anatomy of a dsRNA trigger: differential requirement for the two trigger strands in RNA interference.

Authors:  S Parrish; J Fleenor; S Xu; C Mello; A Fire
Journal:  Mol Cell       Date:  2000-11       Impact factor: 17.970

Review 2.  The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis.

Authors:  Michelle A Carmell; Zhenyu Xuan; Michael Q Zhang; Gregory J Hannon
Journal:  Genes Dev       Date:  2002-11-01       Impact factor: 11.361

3.  The small RNA profile during Drosophila melanogaster development.

Authors:  Alexei A Aravin; Mariana Lagos-Quintana; Abdullah Yalcin; Mihaela Zavolan; Debora Marks; Ben Snyder; Terry Gaasterland; Jutta Meyer; Thomas Tuschl
Journal:  Dev Cell       Date:  2003-08       Impact factor: 12.270

Review 4.  Assembly and function of RNA silencing complexes.

Authors:  Erik J Sontheimer
Journal:  Nat Rev Mol Cell Biol       Date:  2005-02       Impact factor: 94.444

Review 5.  RNA silencing and antiviral defense in plants.

Authors:  Ming-Bo Wang; Michael Metzlaff
Journal:  Curr Opin Plant Biol       Date:  2005-04       Impact factor: 7.834

6.  Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis.

Authors:  Marcin Nowotny; Sergei A Gaidamakov; Robert J Crouch; Wei Yang
Journal:  Cell       Date:  2005-07-01       Impact factor: 41.582

7.  Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage.

Authors:  Yu-Ren Yuan; Yi Pei; Jin-Biao Ma; Vitaly Kuryavyi; Maria Zhadina; Gunter Meister; Hong-Ying Chen; Zbigniew Dauter; Thomas Tuschl; Dinshaw J Patel
Journal:  Mol Cell       Date:  2005-08-05       Impact factor: 17.970

8.  Structural basis for double-stranded RNA processing by Dicer.

Authors:  Ian J Macrae; Kaihong Zhou; Fei Li; Adrian Repic; Angela N Brooks; W Zacheus Cande; Paul D Adams; Jennifer A Doudna
Journal:  Science       Date:  2006-01-13       Impact factor: 47.728

9.  Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation.

Authors:  Tim A Rand; Sean Petersen; Fenghe Du; Xiaodong Wang
Journal:  Cell       Date:  2005-11-03       Impact factor: 41.582

10.  A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions.

Authors:  I Wong; T M Lohman
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-15       Impact factor: 11.205

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  20 in total

1.  Potent and systematic RNAi mediated silencing with single oligonucleotide compounds.

Authors:  Jennifer Lapierre; William Salomon; James Cardia; Karen Bulock; Jessica T Lam; William J Stanney; Glenna Ford; Bernice Smith-Anzures; Tod Woolf; Joanne Kamens; Anastasia Khvorova; Dmitry Samarsky
Journal:  RNA       Date:  2011-04-14       Impact factor: 4.942

Review 2.  Therapeutic application of RNAi: is mRNA targeting finally ready for prime time?

Authors:  Dirk Grimm; Mark A Kay
Journal:  J Clin Invest       Date:  2007-12       Impact factor: 14.808

3.  Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage.

Authors:  Zhihua Du; John K Lee; Richard Tjhen; Robert M Stroud; Thomas L James
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-11       Impact factor: 11.205

4.  Structural basis for RNA-silencing suppression by Tomato aspermy virus protein 2b.

Authors:  Hong-Ying Chen; Jing Yang; Chengqi Lin; Y Adam Yuan
Journal:  EMBO Rep       Date:  2008-07-04       Impact factor: 8.807

5.  Aryl hydrocarbon receptor agonists induce microRNA-335 expression and inhibit lung metastasis of estrogen receptor negative breast cancer cells.

Authors:  Shu Zhang; KyoungHyun Kim; Un Ho Jin; Catherine Pfent; Huojun Cao; Brad Amendt; Xinyi Liu; Heather Wilson-Robles; Stephen Safe
Journal:  Mol Cancer Ther       Date:  2011-10-27       Impact factor: 6.261

6.  The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.

Authors:  Serena De Fazio; Nenad Bartonicek; Monica Di Giacomo; Cei Abreu-Goodger; Aditya Sankar; Charlotta Funaya; Claude Antony; Pedro N Moreira; Anton J Enright; Dónal O'Carroll
Journal:  Nature       Date:  2011-10-23       Impact factor: 49.962

7.  Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex.

Authors:  Yanli Wang; Stefan Juranek; Haitao Li; Gang Sheng; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2008-12-18       Impact factor: 49.962

8.  A multifunctional human Argonaute2-specific monoclonal antibody.

Authors:  Sabine Rüdel; Andrew Flatley; Lasse Weinmann; Elisabeth Kremmer; Gunter Meister
Journal:  RNA       Date:  2008-04-22       Impact factor: 4.942

9.  Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs.

Authors:  Markus Landthaler; Dimos Gaidatzis; Andrea Rothballer; Po Yu Chen; Steven Joseph Soll; Lana Dinic; Tolulope Ojo; Markus Hafner; Mihaela Zavolan; Thomas Tuschl
Journal:  RNA       Date:  2008-10-31       Impact factor: 4.942

10.  Structure of the guide-strand-containing argonaute silencing complex.

Authors:  Yanli Wang; Gang Sheng; Stefan Juranek; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2008-08-27       Impact factor: 49.962

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