Literature DB >> 16104744

Dynamics of xenon binding inside the hydrophobic cavity of pseudo-wild-type bacteriophage T4 lysozyme explored through xenon-based NMR spectroscopy.

Hervé Desvaux1, Lionel Dubois, Gaspard Huber, Michael L Quillin, Patrick Berthault, Brian W Matthews.   

Abstract

Wild-type bacteriophage T4 lysozyme contains a hydrophobic cavity with binding properties that have been extensively studied by X-ray crystallography and NMR. In the present study, the monitoring of 1H chemical shift variations under xenon pressure enables the determination of the noble gas binding constant (K = 60.2 M(-1)). Although the interaction site is highly localized, dipolar cross-relaxation effects between laser-polarized xenon and nearby protons (SPINOE) are rather poor. This is explained by the high value of the xenon-proton dipolar correlation time (0.8 ns), much longer than the previously reported values for xenon in medium-size proteins. This indicates that xenon is highly localized within the protein cavity, as confirmed by the large chemical shift difference between free and bound xenon. The exploitation of the xenon line width variation vs xenon pressure and protein concentration allows the extraction of the exchange correlation time between free and bound xenon. Comparison to the exchange experienced by protein protons indicates that the exchange between the open and closed conformations of T4 lysozyme is not required for xenon binding.

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Year:  2005        PMID: 16104744     DOI: 10.1021/ja053074p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

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3.  Use of experimental crystallographic phases to examine the hydration of polar and nonpolar cavities in T4 lysozyme.

Authors:  Lijun Liu; Michael L Quillin; Brian W Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-09       Impact factor: 11.205

4.  A Genetically Encoded β-Lactamase Reporter for Ultrasensitive (129) Xe NMR in Mammalian Cells.

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5.  A Structural Basis for 129 Xe Hyper-CEST Signal in TEM-1 β-Lactamase.

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6.  Filling of a water-free void explains the allosteric regulation of the β1-adrenergic receptor by cholesterol.

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Journal:  Chem Sci       Date:  2014-08-01       Impact factor: 9.825

8.  129Xe NMR-Protein Sensor Reveals Cellular Ribose Concentration.

Authors:  Serge D Zemerov; Benjamin W Roose; Kelsey L Farenhem; Zhuangyu Zhao; Madison A Stringer; Aaron R Goldman; David W Speicher; Ivan J Dmochowski
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9.  Identification, classification, and signal amplification capabilities of high-turnover gas binding hosts in ultra-sensitive NMR.

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Journal:  Chem Sci       Date:  2015-07-06       Impact factor: 9.825

10.  Detecting O2 binding sites in protein cavities.

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  10 in total

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