Literature DB >> 16093317

High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene.

Hezi Shaked1, Cathy Melamed-Bessudo, Avraham A Levy.   

Abstract

Gene targeting, which is homologous recombination-mediated integration of an extra-chromosomal DNA segment into a chromosomal target sequence, enables the precise disruption or replacement of any gene. Despite its value as a molecular genetic tool, gene targeting remains an inefficient technology in most species. We report that expression of the yeast RAD54 gene, a member of the SWI2/SNF2 chromatin remodeling gene family, enhances gene targeting in Arabidopsis by one to two orders of magnitude, from 10(-4) to 10(-3) in WT plants to 10(-2) to 10(-1). We show that integration events, detected with an assay based on the use of a fluorescent seed marker, are precise and germinally transmitted. These findings suggest that chromatin remodeling is rate-limiting for gene targeting in plants and improves the prospects for using gene targeting for the precise modification of plant genomes.

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Year:  2005        PMID: 16093317      PMCID: PMC1189313          DOI: 10.1073/pnas.0502601102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Stimulation of homologous recombination in plants by expression of the bacterial resolvase ruvC.

Authors:  G Shalev; Y Sitrit; N Avivi-Ragolski; C Lichtenstein; A A Levy
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

2.  The structure-specific endonuclease Ercc1-Xpf is required for targeted gene replacement in embryonic stem cells.

Authors:  L J Niedernhofer; J Essers; G Weeda; B Beverloo; J de Wit; M Muijtjens; H Odijk; J H Hoeijmakers; R Kanaar
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

Review 3.  Re-engineering plant gene targeting.

Authors:  Anne B Britt; Gregory D May
Journal:  Trends Plant Sci       Date:  2003-02       Impact factor: 18.313

4.  Efficient gene targeting by homologous recombination in rice.

Authors:  Rie Terada; Hiroko Urawa; Yoshishige Inagaki; Kazuo Tsugane; Shigeru Iida
Journal:  Nat Biotechnol       Date:  2002-09-09       Impact factor: 54.908

Review 5.  Altering the genome by homologous recombination.

Authors:  M R Capecchi
Journal:  Science       Date:  1989-06-16       Impact factor: 47.728

6.  Targeted disruption in Arabidopsis.

Authors:  S A Kempin; S J Liljegren; L M Block; S D Rounsley; M F Yanofsky; E Lam
Journal:  Nature       Date:  1997-10-23       Impact factor: 49.962

7.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

8.  BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis.

Authors:  Shin Takeda; Zerihun Tadele; Ingo Hofmann; Aline V Probst; Karel J Angelis; Hidetaka Kaya; Takashi Araki; Tesfaye Mengiste; Ortrun Mittelsten Scheid; Kei-ichi Shibahara; Dierk Scheel; Jerzy Paszkowski
Journal:  Genes Dev       Date:  2004-04-01       Impact factor: 11.361

9.  Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament.

Authors:  Andrei Alexeev; Alexander Mazin; Stephen C Kowalczykowski
Journal:  Nat Struct Biol       Date:  2003-03

Review 10.  Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions.

Authors:  J A Eisen; K S Sweder; P C Hanawalt
Journal:  Nucleic Acids Res       Date:  1995-07-25       Impact factor: 16.971

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  44 in total

1.  In planta gene targeting.

Authors:  Friedrich Fauser; Nadine Roth; Michael Pacher; Gabriele Ilg; Rocío Sánchez-Fernández; Christian Biesgen; Holger Puchta
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

2.  Green light for gene targeting in plants.

Authors:  Holger Puchta; Barbara Hohn
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-16       Impact factor: 11.205

3.  Nontransgenic genome modification in plant cells.

Authors:  Ira Marton; Amir Zuker; Elena Shklarman; Vardit Zeevi; Andrey Tovkach; Suzy Roffe; Marianna Ovadis; Tzvi Tzfira; Alexander Vainstein
Journal:  Plant Physiol       Date:  2010-09-27       Impact factor: 8.340

4.  Whole genome approaches to identify early meiotic gene candidates in cereals.

Authors:  William D Bovill; Priyanka Deveshwar; Sanjay Kapoor; Jason A Able
Journal:  Funct Integr Genomics       Date:  2008-10-04       Impact factor: 3.410

Review 5.  Using transgenic modulation of protein synthesis and accumulation to probe protein signaling networks in Arabidopsis thaliana.

Authors:  Sankalpi N Warnasooriya; Beronda L Montgomery
Journal:  Plant Signal Behav       Date:  2011-09

Review 6.  DNA Damage Repair in the Context of Plant Chromatin.

Authors:  Mattia Donà; Ortrun Mittelsten Scheid
Journal:  Plant Physiol       Date:  2015-06-18       Impact factor: 8.340

Review 7.  Can genetic engineering-based methods for gene function identification be eclipsed by genome editing in plants? A comparison of methodologies.

Authors:  P P Amritha; Jasmine M Shah
Journal:  Mol Genet Genomics       Date:  2021-03-09       Impact factor: 3.291

8.  Targeted DNA insertion in plants.

Authors:  Oliver Xiaoou Dong; Pamela C Ronald
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-30       Impact factor: 11.205

9.  ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: A disconnect between somatic and germinal cells.

Authors:  Qiwei Shan; Nicholas J Baltes; Paul Atkins; Elida R Kirkland; Yong Zhang; Joshua A Baller; Levi G Lowder; Aimee A Malzahn; John C Haugner; Burckhard Seelig; Daniel F Voytas; Yiping Qi
Journal:  J Genet Genomics       Date:  2018-10-10       Impact factor: 4.275

10.  Nonhomologous end joining-mediated gene replacement in plant cells.

Authors:  Dan Michael Weinthal; Roslyn Ann Taylor; Tzvi Tzfira
Journal:  Plant Physiol       Date:  2013-03-18       Impact factor: 8.340

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