Literature DB >> 16089573

Multiple weak hits confuse complex systems: a transcriptional regulatory network as an example.

Vilmos Agoston1, Péter Csermely, Sándor Pongor.   

Abstract

Robust systems, like the molecular networks of living cells, are often resistant to single hits such as those caused by high-specificity drugs. Here we show that partial weakening of the Escherichia coli and Saccharomyces cerevisiae transcriptional regulatory networks at a small number (3-5) of selected nodes can have a greater impact than the complete elimination of a single selected node. In both cases, the targeted nodes have the greatest possible impact; still, the results suggest that in some cases broader specificity compounds or multitarget drug therapies may be more effective than individual high-affinity, high-specificity ones. Multiple but partial attacks mimic well a number of in vivo scenarios and may be useful in the efficient modification of other complex systems.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16089573     DOI: 10.1103/PhysRevE.71.051909

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  38 in total

Review 1.  Advancing genetic theory and application by metabolic quantitative trait loci analysis.

Authors:  Danielj Kliebenstein
Journal:  Plant Cell       Date:  2009-06-12       Impact factor: 11.277

2.  RMut: R package for a Boolean sensitivity analysis against various types of mutations.

Authors:  Hung-Cuong Trinh; Yung-Keun Kwon
Journal:  PLoS One       Date:  2019-03-19       Impact factor: 3.240

Review 3.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

4.  A strategy based on protein-protein interface motifs may help in identifying drug off-targets.

Authors:  H Billur Engin; Ozlem Keskin; Ruth Nussinov; Attila Gursoy
Journal:  J Chem Inf Model       Date:  2012-07-31       Impact factor: 4.956

5.  Traditional Knowledge of Western Herbal Medicine and Complex Systems Science.

Authors:  Kathryn Niemeyer; Iris R Bell; Mary Koithan
Journal:  J Herb Med       Date:  2013-09       Impact factor: 3.032

Review 6.  Systems genetics for drug target discovery.

Authors:  Nadia M Penrod; Richard Cowper-Sal-lari; Jason H Moore
Journal:  Trends Pharmacol Sci       Date:  2011-08-19       Impact factor: 14.819

7.  Reducing in fl uenza spreading over the airline network.

Authors:  Jose Marcelino; Marcus Kaiser
Journal:  PLoS Curr       Date:  2009-08-21

Review 8.  Structure-based systems biology for analyzing off-target binding.

Authors:  Lei Xie; Li Xie; Philip E Bourne
Journal:  Curr Opin Struct Biol       Date:  2011-02-01       Impact factor: 6.809

9.  Chemogenomic profiling predicts antifungal synergies.

Authors:  Gregor Jansen; Anna Y Lee; Elias Epp; Amélie Fredette; Jamie Surprenant; Doreen Harcus; Michelle Scott; Elaine Tan; Tamiko Nishimura; Malcolm Whiteway; Michael Hallett; David Y Thomas
Journal:  Mol Syst Biol       Date:  2009-12-22       Impact factor: 11.429

10.  Systems biology and cancer prevention: all options on the table.

Authors:  Simon Rosenfeld; Izet Kapetanovic
Journal:  Gene Regul Syst Bio       Date:  2008-10-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.