Literature DB >> 21862141

Systems genetics for drug target discovery.

Nadia M Penrod1, Richard Cowper-Sal-lari, Jason H Moore.   

Abstract

The collection and analysis of genomic data has the potential to reveal novel druggable targets by providing insight into the genetic basis of disease. However, the number of drugs targeting new molecular entities, approved by the US Food and Drug Administration has not increased in the years since the collection of genomic data has become commonplace. The paucity of translatable results can be partly attributed to conventional analysis methods that test one gene at a time in an effort to identify disease-associated factors as candidate drug targets. By disengaging genetic factors from their position within the genetic regulatory system, much of the information stored within the genomic data set is lost. Here we discuss how genomic data is used to identify disease-associated genes or genomic regions, how disease-associated regions are validated as functional targets, and the role network analysis can play in bridging the gap between data generation and effective drug target identification.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21862141      PMCID: PMC3185183          DOI: 10.1016/j.tips.2011.07.002

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  64 in total

1.  From molecular to modular cell biology.

Authors:  L H Hartwell; J J Hopfield; S Leibler; A W Murray
Journal:  Nature       Date:  1999-12-02       Impact factor: 49.962

2.  Drug discovery: a historical perspective.

Authors:  J Drews
Journal:  Science       Date:  2000-03-17       Impact factor: 47.728

3.  The structure of haplotype blocks in the human genome.

Authors:  Stacey B Gabriel; Stephen F Schaffner; Huy Nguyen; Jamie M Moore; Jessica Roy; Brendan Blumenstiel; John Higgins; Matthew DeFelice; Amy Lochner; Maura Faggart; Shau Neen Liu-Cordero; Charles Rotimi; Adebowale Adeyemo; Richard Cooper; Ryk Ward; Eric S Lander; Mark J Daly; David Altshuler
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

Review 4.  Network biology: understanding the cell's functional organization.

Authors:  Albert-László Barabási; Zoltán N Oltvai
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

5.  Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease.

Authors:  Kirk E Lohmueller; Celeste L Pearce; Malcolm Pike; Eric S Lander; Joel N Hirschhorn
Journal:  Nat Genet       Date:  2003-01-13       Impact factor: 38.330

Review 6.  The druggable genome.

Authors:  Andrew L Hopkins; Colin R Groom
Journal:  Nat Rev Drug Discov       Date:  2002-09       Impact factor: 84.694

7.  FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Authors:  Mathieu Lupien; Jérôme Eeckhoute; Clifford A Meyer; Qianben Wang; Yong Zhang; Wei Li; Jason S Carroll; X Shirley Liu; Myles Brown
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

8.  A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms.

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Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

9.  The sequence of the human genome.

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Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

10.  Repeated observation of breast tumor subtypes in independent gene expression data sets.

Authors:  Therese Sorlie; Robert Tibshirani; Joel Parker; Trevor Hastie; J S Marron; Andrew Nobel; Shibing Deng; Hilde Johnsen; Robert Pesich; Stephanie Geisler; Janos Demeter; Charles M Perou; Per E Lønning; Patrick O Brown; Anne-Lise Børresen-Dale; David Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-26       Impact factor: 12.779

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  16 in total

Review 1.  Drug discovery from marine microbes.

Authors:  William H Gerwick; Amanda M Fenner
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Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

3.  Co-expression networks reveal the tissue-specific regulation of transcription and splicing.

Authors:  Ashis Saha; Yungil Kim; Ariel D H Gewirtz; Brian Jo; Chuan Gao; Ian C McDowell; Barbara E Engelhardt; Alexis Battle
Journal:  Genome Res       Date:  2017-10-11       Impact factor: 9.043

Review 4.  Pathway analysis of genomic data: concepts, methods, and prospects for future development.

Authors:  Vijay K Ramanan; Li Shen; Jason H Moore; Andrew J Saykin
Journal:  Trends Genet       Date:  2012-04-03       Impact factor: 11.639

Review 5.  Genetic studies of quantitative MCI and AD phenotypes in ADNI: Progress, opportunities, and plans.

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Journal:  Alzheimers Dement       Date:  2015-07       Impact factor: 21.566

Review 6.  Pathways to neurodegeneration: mechanistic insights from GWAS in Alzheimer's disease, Parkinson's disease, and related disorders.

Authors:  Vijay K Ramanan; Andrew J Saykin
Journal:  Am J Neurodegener Dis       Date:  2013-09-18

Review 7.  In silico frameworks for systematic pre-clinical screening of potential anti-leukemia therapeutics.

Authors:  Matthew H Ung; Frederick S Varn; Chao Cheng
Journal:  Expert Opin Drug Discov       Date:  2016-10-11       Impact factor: 6.098

8.  Genome-wide pathway analysis of memory impairment in the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort implicates gene candidates, canonical pathways, and networks.

Authors:  Vijay K Ramanan; Sungeun Kim; Kelly Holohan; Li Shen; Kwangsik Nho; Shannon L Risacher; Tatiana M Foroud; Shubhabrata Mukherjee; Paul K Crane; Paul S Aisen; Ronald C Petersen; Michael W Weiner; Andrew J Saykin
Journal:  Brain Imaging Behav       Date:  2012-12       Impact factor: 3.978

Review 9.  Cognitive dysfunction in psychiatric disorders: characteristics, causes and the quest for improved therapy.

Authors:  Mark J Millan; Yves Agid; Martin Brüne; Edward T Bullmore; Cameron S Carter; Nicola S Clayton; Richard Connor; Sabrina Davis; Bill Deakin; Robert J DeRubeis; Bruno Dubois; Mark A Geyer; Guy M Goodwin; Philip Gorwood; Thérèse M Jay; Marian Joëls; Isabelle M Mansuy; Andreas Meyer-Lindenberg; Declan Murphy; Edmund Rolls; Bernd Saletu; Michael Spedding; John Sweeney; Miles Whittington; Larry J Young
Journal:  Nat Rev Drug Discov       Date:  2012-02-01       Impact factor: 84.694

10.  Navigating traditional chinese medicine network pharmacology and computational tools.

Authors:  Ming Yang; Jia-Lei Chen; Li-Wen Xu; Guang Ji
Journal:  Evid Based Complement Alternat Med       Date:  2013-07-31       Impact factor: 2.629

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