Literature DB >> 19525414

Advancing genetic theory and application by metabolic quantitative trait loci analysis.

Danielj Kliebenstein1.   

Abstract

This review describes recent advances in the analysis of metabolism using quantitative genetics. It focuses on how recent metabolic quantitative trait loci (QTL) studies enhance our understanding of the genetic architecture underlying naturally variable phenotypes and the impact of this fundamental research on agriculture, specifically crop breeding. In particular, the role of whole-genome duplications in generating quantitative genetic variation within a species is highlighted and the potential uses of this phenomenon presented. Additionally, the review describes how new observations from metabolic QTL mapping analyses are helping to shape and expand the concepts of genetic epistasis.

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Year:  2009        PMID： 19525414      PMCID： PMC2714920          DOI： 10.1105/tpc.109.067611

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


  80 in total

1.  The structure of DNA.

Authors:  J D WATSON; F H CRICK
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1953

2.  Modular epistasis in yeast metabolism.

Authors:  Daniel Segrè; Alexander Deluna; George M Church; Roy Kishony
Journal:  Nat Genet       Date:  2004-12-12       Impact factor: 38.330

3.  Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis.

Authors:  Marilyn A L West; Kyunga Kim; Daniel J Kliebenstein; Hans van Leeuwen; Richard W Michelmore; R W Doerge; Dina A St Clair
Journal:  Genetics       Date:  2006-12-18       Impact factor: 4.562

Review 4.  The glucosinolate-myrosinase system in an ecological and evolutionary context.

Authors:  Dan J Kliebenstein; Juergen Kroymann; Thomas Mitchell-Olds
Journal:  Curr Opin Plant Biol       Date:  2005-06       Impact factor: 7.834

5.  The genetic basis of developmental abnormalities in interpopulation hybrids of the moss Ceratodon purpureus.

Authors:  Stuart F McDaniel; John H Willis; A Jonathan Shaw
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

6.  The genetic basis of constitutive and herbivore-induced ESP-independent nitrile formation in Arabidopsis.

Authors:  Meike Burow; Anja Losansky; René Müller; Antje Plock; Daniel J Kliebenstein; Ute Wittstock
Journal:  Plant Physiol       Date:  2008-11-05       Impact factor: 8.340

7.  Subclade of flavin-monooxygenases involved in aliphatic glucosinolate biosynthesis.

Authors:  Jing Li; Bjarne Gram Hansen; James A Ober; Daniel J Kliebenstein; Barbara Ann Halkier
Journal:  Plant Physiol       Date:  2008-09-17       Impact factor: 8.340

8.  The isolation of abscisic acid (ABA) deficient mutants by selection of induced revertants in non-germinating gibberellin sensitive lines of Arabidopsis thaliana (L.) heynh.

Authors:  M Koornneef; M L Jorna; D L Brinkhorst-van der Swan; C M Karssen
Journal:  Theor Appl Genet       Date:  1982-12       Impact factor: 5.699

9.  Linking metabolic QTLs with network and cis-eQTLs controlling biosynthetic pathways.

Authors:  Adam M Wentzell; Heather C Rowe; Bjarne Gram Hansen; Carla Ticconi; Barbara Ann Halkier; Daniel J Kliebenstein
Journal:  PLoS Genet       Date:  2007-08-01       Impact factor: 5.917

10.  A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates.

Authors:  Ida Elken Sønderby; Bjarne Gram Hansen; Nanna Bjarnholt; Carla Ticconi; Barbara Ann Halkier; Daniel J Kliebenstein
Journal:  PLoS One       Date:  2007-12-19       Impact factor: 3.240
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  25 in total

Review 1.  Metabolomics of forage plants: a review.

Authors:  Susanne Rasmussen; Anthony J Parsons; Christopher S Jones
Journal:  Ann Bot       Date:  2012-02-19       Impact factor: 4.357

2.  Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation.

Authors:  Takayuki Tohge; Federico Scossa; Alisdair R Fernie
Journal:  Plant Physiol       Date:  2015-09-14       Impact factor: 8.340

3.  Natural Variation of Plant Metabolism: Genetic Mechanisms, Interpretive Caveats, and Evolutionary and Mechanistic Insights.

Authors:  Nicole E Soltis; Daniel J Kliebenstein
Journal:  Plant Physiol       Date:  2015-08-13       Impact factor: 8.340

Review 4.  Metabolic networks: how to identify key components in the regulation of metabolism and growth.

Authors:  Mark Stitt; Ronan Sulpice; Joost Keurentjes
Journal:  Plant Physiol       Date:  2009-12-11       Impact factor: 8.340

Review 5.  What has natural variation taught us about plant development, physiology, and adaptation?

Authors:  Carlos Alonso-Blanco; Mark G M Aarts; Leonie Bentsink; Joost J B Keurentjes; Matthieu Reymond; Dick Vreugdenhil; Maarten Koornneef
Journal:  Plant Cell       Date:  2009-07-02       Impact factor: 11.277

Review 6.  Systems biology uncovers the foundation of natural genetic diversity.

Authors:  Daniel J Kliebenstein
Journal:  Plant Physiol       Date:  2009-11-20       Impact factor: 8.340

7.  Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population.

Authors:  Weiwei Wen; Kun Li; Saleh Alseekh; Nooshin Omranian; Lijun Zhao; Yang Zhou; Yingjie Xiao; Min Jin; Ning Yang; Haijun Liu; Alexandra Florian; Wenqiang Li; Qingchun Pan; Zoran Nikoloski; Jianbing Yan; Alisdair R Fernie
Journal:  Plant Cell       Date:  2015-07-17       Impact factor: 11.277

Review 8.  Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks.

Authors:  George W Bassel; Allison Gaudinier; Siobhan M Brady; Lars Hennig; Seung Y Rhee; Ive De Smet
Journal:  Plant Cell       Date:  2012-10-30       Impact factor: 11.277

Review 9.  Systems genetics in "-omics" era: current and future development.

Authors:  Hong Li
Journal:  Theory Biosci       Date:  2012-11-09       Impact factor: 1.919

10.  Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints.

Authors:  Michaël Bekaert; Patrick P Edger; J Chris Pires; Gavin C Conant
Journal:  Plant Cell       Date:  2011-05-03       Impact factor: 11.277
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