Literature DB >> 16086354

Efficient one-step synthesis of biologically related lariat RNAs by a deoxyribozyme.

Yangming Wang1, Scott K Silverman.   

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Year:  2005        PMID: 16086354      PMCID: PMC1513635          DOI: 10.1002/anie.200501643

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


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  14 in total

1.  An RNA switch at the 5' splice site requires ATP and the DEAD box protein Prp28p.

Authors:  J P Staley; C Guthrie
Journal:  Mol Cell       Date:  1999-01       Impact factor: 17.970

2.  RNA lariat debranching enzyme.

Authors:  S L Ooi; C Dann; K Nam; D J Leahy; M J Damha; J D Boeke
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

3.  Directing the outcome of deoxyribozyme selections to favor native 3'-5' RNA ligation.

Authors:  Yangming Wang; Scott K Silverman
Journal:  Biochemistry       Date:  2005-03-01       Impact factor: 3.162

4.  A general purpose RNA-cleaving DNA enzyme.

Authors:  S W Santoro; G F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-29       Impact factor: 11.205

5.  Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast.

Authors:  C A Davis; L Grate; M Spingola; M Ares
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

6.  A self-splicing RNA excises an intron lariat.

Authors:  C L Peebles; P S Perlman; K L Mecklenburg; M L Petrillo; J H Tabor; K A Jarrell; H L Cheng
Journal:  Cell       Date:  1986-01-31       Impact factor: 41.582

7.  Nonenzymatic, template-directed ligation of oligoribonucleotides is highly regioselective for the formation of 3'-5' phosphodiester bonds.

Authors:  R Rohatgi; D P Bartel; J W Szostak
Journal:  J Am Chem Soc       Date:  1996-04-10       Impact factor: 15.419

8.  Deoxyribozymes that synthesize branched and lariat RNA.

Authors:  Yangming Wang; Scott K Silverman
Journal:  J Am Chem Soc       Date:  2003-06-11       Impact factor: 15.419

9.  Isolation and sequence of the gene for actin in Saccharomyces cerevisiae.

Authors:  R Ng; J Abelson
Journal:  Proc Natl Acad Sci U S A       Date:  1980-07       Impact factor: 11.205

10.  Base substitution in an intervening sequence of a beta+-thalassemic human globin gene.

Authors:  R A Spritz; P Jagadeeswaran; P V Choudary; P A Biro; J T Elder; J K deRiel; J L Manley; M L Gefter; B G Forget; S M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  1981-04       Impact factor: 11.205

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  13 in total

1.  A general two-step strategy to synthesize lariat RNAs.

Authors:  Yangming Wang; Scott K Silverman
Journal:  RNA       Date:  2005-12-22       Impact factor: 4.942

2.  Convergent and general one-step DNA-catalyzed synthesis of multiply branched DNA.

Authors:  Timothy P Mui; Scott K Silverman
Journal:  Org Lett       Date:  2008-09-23       Impact factor: 6.005

3.  Adenosine is inherently favored as the branch-site RNA nucleotide in a structural context that resembles natural RNA splicing.

Authors:  Elena Zelin; Yangming Wang; Scott K Silverman
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

4.  Specific Recognition of a Single-Stranded RNA Sequence by a Synthetic Antibody Fragment.

Authors:  Yaming Shao; Hao Huang; Daoming Qin; Nan-Sheng Li; Akiko Koide; Jonathan P Staley; Shohei Koide; Anthony A Kossiakoff; Joseph A Piccirilli
Journal:  J Mol Biol       Date:  2016-09-02       Impact factor: 5.469

5.  Mg2+-dependent conformational changes and product release during DNA-catalyzed RNA ligation monitored by Bimane fluorescence.

Authors:  Elisa Turriani; Claudia Höbartner; Thomas M Jovin
Journal:  Nucleic Acids Res       Date:  2014-12-10       Impact factor: 16.971

6.  Use of deoxyribozymes in RNA research.

Authors:  Scott K Silverman; Dana A Baum
Journal:  Methods Enzymol       Date:  2009-11-17       Impact factor: 1.600

Review 7.  DNA as a versatile chemical component for catalysis, encoding, and stereocontrol.

Authors:  Scott K Silverman
Journal:  Angew Chem Int Ed Engl       Date:  2010-09-24       Impact factor: 15.336

Review 8.  Deoxyribozymes: selection design and serendipity in the development of DNA catalysts.

Authors:  Scott K Silverman
Journal:  Acc Chem Res       Date:  2009-10-20       Impact factor: 22.384

9.  Ty1 reverse transcriptase does not read through the proposed 2',5'-branched retrotransposition intermediate in vitro.

Authors:  Elizabeth D Pratico; Scott K Silverman
Journal:  RNA       Date:  2007-07-24       Impact factor: 4.942

Review 10.  In vitro selection, characterization, and application of deoxyribozymes that cleave RNA.

Authors:  Scott K Silverman
Journal:  Nucleic Acids Res       Date:  2005-11-11       Impact factor: 16.971

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