Literature DB >> 16077008

Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression.

Horst Irlbacher1, Jacqueline Franke, Thomas Manke, Martin Vingron, Ann E Ehrenhofer-Murray.   

Abstract

Heterochromatinization at the silent mating-type loci HMR and HML in Saccharomyces cerevisiae is achieved by targeting the Sir complex to these regions via a set of anchor proteins that bind to the silencers. Here, we have identified a novel heterochromatin-targeting factor for HML, the protein Sum1, a repressor of meiotic genes during vegetative growth. Sum1 bound both in vitro and in vivo to HML via a functional element within the HML-E silencer, and sum1Delta caused HML derepression. Significantly, Sum1 was also required for origin activity of HML-E, demonstrating a role of Sum1 in replication initiation. In a genome-wide search for Sum1-regulated origins, we identified a set of autonomous replicative sequences (ARS elements) that bound both the origin recognition complex and Sum1. Full initiation activity of these origins required Sum1, and their origin activity was decreased upon removal of the Sum1-binding site. Thus, Sum1 constitutes a novel global regulator of replication initiation in yeast.

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Year:  2005        PMID: 16077008      PMCID: PMC1182343          DOI: 10.1101/gad.334805

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  58 in total

Review 1.  Silencing: the establishment and inheritance of stable, repressed transcription states.

Authors:  D H Rivier; J Rine
Journal:  Curr Opin Genet Dev       Date:  1992-04       Impact factor: 5.578

2.  The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation.

Authors:  Gwendolyn M Wilmes; Stephen P Bell
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-26       Impact factor: 11.205

3.  The pachytene checkpoint in Saccharomyces cerevisiae requires the Sum1 transcriptional repressor.

Authors:  A Lindgren; D Bungard; M Pierce; J Xie; A Vershon; E Winter
Journal:  EMBO J       Date:  2000-12-01       Impact factor: 11.598

4.  Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

Authors:  J J Wyrick; J G Aparicio; T Chen; J D Barnett; E G Jennings; R A Young; S P Bell; O M Aparicio
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

5.  Conversion of a gene-specific repressor to a regional silencer.

Authors:  L N Rusché; J Rine
Journal:  Genes Dev       Date:  2001-04-15       Impact factor: 11.361

6.  A novel form of transcriptional silencing by Sum1-1 requires Hst1 and the origin recognition complex.

Authors:  A Sutton; R C Heller; J Landry; J S Choy; A Sirko; R Sternglanz
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

7.  Roles for internal and flanking sequences in regulating the activity of mating-type-silencer-associated replication origins in Saccharomyces cerevisiae.

Authors:  K Sharma; M Weinberger; J A Huberman
Journal:  Genetics       Date:  2001-09       Impact factor: 4.562

8.  Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase.

Authors:  S Imai; C M Armstrong; M Kaeberlein; L Guarente
Journal:  Nature       Date:  2000-02-17       Impact factor: 49.962

9.  Replication dynamics of the yeast genome.

Authors:  M K Raghuraman; E A Winzeler; D Collingwood; S Hunt; L Wodicka; A Conway; D J Lockhart; R W Davis; B J Brewer; W L Fangman
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

10.  Nucleosomes positioned by ORC facilitate the initiation of DNA replication.

Authors:  J R Lipford; S P Bell
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

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  32 in total

1.  Swapping the gene-specific and regional silencing specificities of the Hst1 and Sir2 histone deacetylases.

Authors:  Janet Mead; Ron McCord; Laura Youngster; Mandakini Sharma; Marc R Gartenberg; Andrew K Vershon
Journal:  Mol Cell Biol       Date:  2007-01-22       Impact factor: 4.272

2.  Subtelomeric ACS-containing proto-silencers act as antisilencers in replication factors mutants in Saccharomyces cerevisiae.

Authors:  Muhammad Attiq Rehman; Dongliang Wang; Genevieve Fourel; Eric Gilson; Krassimir Yankulov
Journal:  Mol Biol Cell       Date:  2008-11-12       Impact factor: 4.138

3.  The Ime2 protein kinase enhances the disassociation of the Sum1 repressor from middle meiotic promoters.

Authors:  Noreen T Ahmed; David Bungard; Marcus E Shin; Michael Moore; Edward Winter
Journal:  Mol Cell Biol       Date:  2009-06-15       Impact factor: 4.272

4.  Modeling of chromosomal epigenetic silencing processes.

Authors:  Attila Becskei; Simone Scherrer; Janos Z Kelemen; Ann Ehrenhofer Murray
Journal:  Transcription       Date:  2011-07

5.  The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin.

Authors:  Philipp Müller; Sookhee Park; Erika Shor; Dana J Huebert; Christopher L Warren; Aseem Z Ansari; Michael Weinreich; Matthew L Eaton; David M MacAlpine; Catherine A Fox
Journal:  Genes Dev       Date:  2010-07-01       Impact factor: 11.361

Review 6.  The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae.

Authors:  Marc R Gartenberg; Jeffrey S Smith
Journal:  Genetics       Date:  2016-08       Impact factor: 4.562

7.  Analyses of SUM1-1-mediated long-range repression.

Authors:  Lourdes Valenzuela; Sunil Gangadharan; Rohinton T Kamakaka
Journal:  Genetics       Date:  2005-11-04       Impact factor: 4.562

8.  GCN5 is a positive regulator of origins of DNA replication in Saccharomyces cerevisiae.

Authors:  Maria Claudia Espinosa; Muhammad Attiq Rehman; Patricia Chisamore-Robert; Daniel Jeffery; Krassimir Yankulov
Journal:  PLoS One       Date:  2010-01-29       Impact factor: 3.240

9.  Spatial epigenetic control of mono- and bistable gene expression.

Authors:  János Z Kelemen; Prasuna Ratna; Simone Scherrer; Attila Becskei
Journal:  PLoS Biol       Date:  2010-03-16       Impact factor: 8.029

10.  The SNF2-family member Fun30 promotes gene silencing in heterochromatic loci.

Authors:  Ana Neves-Costa; W Ryan Will; Anna T Vetter; J Ross Miller; Patrick Varga-Weisz
Journal:  PLoS One       Date:  2009-12-01       Impact factor: 3.240

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