Literature DB >> 16045753

Mechanistic investigation of a highly active phosphite dehydrogenase mutant and its application for NADPH regeneration.

Ryan Woodyer1, Huimin Zhao, Wilfred A van der Donk.   

Abstract

NAD(P)H regeneration is important for biocatalytic reactions that require these costly cofactors. A mutant phosphite dehydrogenase (PTDH-E175A/A176R) that utilizes both NAD and NADP efficiently is a very promising system for NAD(P)H regeneration. In this work, both the kinetic mechanism and practical application of PTDH-E175A/A176R were investigated for better understanding of the enzyme and to provide a basis for future optimization. Kinetic isotope effect studies with PTDH-E175A/A176R showed that the hydride transfer step is (partially) rate determining with both NAD and NADP giving (D)V values of 2.2 and 1.7, respectively, and (D)V/K(m,phosphite) values of 1.9 and 1.7, respectively. To better comprehend the relaxed cofactor specificity, the cofactor dissociation constants were determined utilizing tryptophan intrinsic fluorescence quenching. The dissociation constants of NAD and NADP with PTDH-E175A/A176R were 53 and 1.9 microm, respectively, while those of the products NADH and NADPH were 17.4 and 1.22 microm, respectively. Using sulfite as a substrate mimic, the binding order was established, with the cofactor binding first and sulfite binding second. The low dissociation constant for the cofactor product NADPH combined with the reduced values for (D)V and k(cat) implies that product release may become partially rate determining. However, product inhibition does not prevent efficient in situ NADPH regeneration by PTDH-E175A/A176R in a model system in which xylose was converted into xylitol by NADP-dependent xylose reductase. The in situ regeneration proceeded at a rate approximately fourfold faster with PTDH-E175A/A176R than with either WT PTDH or a NADP-specific Pseudomonas sp.101 formate dehydrogenase mutant with a total turnover number for NADPH of 2500.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16045753     DOI: 10.1111/j.1742-4658.2005.04788.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  7 in total

Review 1.  Rings, radicals, and regeneration: the early years of a bioorganic laboratory.

Authors:  Wilfred A van der Donk
Journal:  J Org Chem       Date:  2006-12-22       Impact factor: 4.354

2.  Pre-steady-state studies of phosphite dehydrogenase demonstrate that hydride transfer is fully rate limiting.

Authors:  Emily J Fogle; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2007-10-20       Impact factor: 3.162

3.  Enantioselective, ketoreductase-based entry into pharmaceutical building blocks: ethanol as tunable nicotinamide reductant.

Authors:  Sylvain Broussy; Ross W Cheloha; David B Berkowitz
Journal:  Org Lett       Date:  2009-01-15       Impact factor: 6.005

4.  Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase.

Authors:  Graeme W Howe; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2019-10-07       Impact factor: 3.162

5.  A Novel NADP-Dependent Formate Dehydrogenase From the Hyperthermophilic Archaeon Thermococcus onnurineus NA1.

Authors:  Ji-In Yang; Seong Hyuk Lee; Ji-Young Ryu; Hyun Sook Lee; Sung Gyun Kang
Journal:  Front Microbiol       Date:  2022-03-15       Impact factor: 5.640

6.  Directed evolution of phosphite dehydrogenase to cycle noncanonical redox cofactors via universal growth selection platform.

Authors:  Linyue Zhang; Edward King; William B Black; Christian M Heckmann; Allison Wolder; Youtian Cui; Francis Nicklen; Justin B Siegel; Ray Luo; Caroline E Paul; Han Li
Journal:  Nat Commun       Date:  2022-08-26       Impact factor: 17.694

7.  The Lamin B receptor is essential for cholesterol synthesis and perturbed by disease-causing mutations.

Authors:  Pei-Ling Tsai; Chenguang Zhao; Elizabeth Turner; Christian Schlieker
Journal:  Elife       Date:  2016-06-23       Impact factor: 8.140

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.