Literature DB >> 16036914

Origin of informational polymers. Differential stability of 3'- and 5'-phosphoester bonds in deoxy monomers and oligomers.

Raffaele Saladino1, Claudia Crestini, Vincenzo Busiello, Fabiana Ciciriello, Giovanna Costanzo, Ernesto Di Mauro.   

Abstract

To survive, an informational macromolecule must solve the major problem set by its very polymeric nature: instability. This is especially true in prebiotic terms because of the presumed initial absence of protective structures (proteins, lipids, etc.). We have analyzed the stability of the beta-glycosidic and of the 3'- and 5'-phosphoester bonds in both deoxy monomers and deoxy oligomers under a large set of conditions. The results show a strong dependence of the relative stability of these bonds on the physico-chemical environment. A set of conditions has been identified in which the stability of polymers becomes comparable with that of the precursor monomers. In certain instances the stability of the 5'-phosphoester bond is even higher in the polymer than in the mononucleotide.

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Year:  2005        PMID: 16036914     DOI: 10.1074/jbc.M504537200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  10 in total

1.  Nonenzymatic RNA ligation in water.

Authors:  Samanta Pino; Fabiana Ciciriello; Giovanna Costanzo; Ernesto Di Mauro
Journal:  J Biol Chem       Date:  2008-10-31       Impact factor: 5.157

2.  Origin of first cells at terrestrial, anoxic geothermal fields.

Authors:  Armen Y Mulkidjanian; Andrew Yu Bychkov; Daria V Dibrova; Michael Y Galperin; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

3.  About a formamide-based origin of informational polymers: syntheses of nucleobases and favourable thermodynamic niches for early polymers.

Authors:  Raffaele Saladino; Claudia Crestini; Fabiana Ciciriello; Giovanna Costanzo; Ernesto Di Mauro
Journal:  Orig Life Evol Biosph       Date:  2006-12       Impact factor: 1.950

4.  The role of the formamide/zirconia system in the synthesis of nucleobases and biogenic carboxylic acid derivatives.

Authors:  Raffaele Saladino; Veronica Neri; Claudia Crestini; Giovanna Costanzo; Michele Graciotti; Ernesto Di Mauro
Journal:  J Mol Evol       Date:  2010-07-28       Impact factor: 2.395

5.  Formamide as the main building block in the origin of nucleic acids.

Authors:  Giovanna Costanzo; Raffaele Saladino; Claudia Crestini; Fabiana Ciciriello; Ernesto Di Mauro
Journal:  BMC Evol Biol       Date:  2007-08-16       Impact factor: 3.260

6.  Generation of long RNA chains in water.

Authors:  Giovanna Costanzo; Samanta Pino; Fabiana Ciciriello; Ernesto Di Mauro
Journal:  J Biol Chem       Date:  2009-10-02       Impact factor: 5.157

7.  From formamide to RNA, the path is tenuous but continuous.

Authors:  Samanta Pino; Judit E Sponer; Giovanna Costanzo; Raffaele Saladino; Ernesto Di Mauro
Journal:  Life (Basel)       Date:  2015-01-30

Review 8.  Chemomimesis and Molecular Darwinism in Action: From Abiotic Generation of Nucleobases to Nucleosides and RNA.

Authors:  Raffaele Saladino; Judit E Šponer; Jiří Šponer; Giovanna Costanzo; Samanta Pino; Ernesto Di Mauro
Journal:  Life (Basel)       Date:  2018-06-20

Review 9.  Prebiotic Organic Chemistry of Formamide and the Origin of Life in Planetary Conditions: What We Know and What Is the Future.

Authors:  Bruno Mattia Bizzarri; Raffaele Saladino; Ines Delfino; Juan Manuel García-Ruiz; Ernesto Di Mauro
Journal:  Int J Mol Sci       Date:  2021-01-18       Impact factor: 6.208

Review 10.  The Prevailing Catalytic Role of Meteorites in Formamide Prebiotic Processes.

Authors:  Raffaele Saladino; Lorenzo Botta; Ernesto Di Mauro
Journal:  Life (Basel)       Date:  2018-02-22
  10 in total

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